Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4484

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,411,043	+				-0.6
1,411,161	+		GFF4483	0.13	-0.1
1,411,161	+		GFF4483	0.13	-0.2
1,411,161	+		GFF4483	0.13	+1.3
1,411,162	-		GFF4483	0.13	+1.0
1,411,162	-		GFF4483	0.13	+0.2
1,411,330	-		GFF4483	0.39	-0.4
1,411,338	+		GFF4483	0.40	-0.1
1,411,646	-		GFF4483	0.88	-0.1
1,411,751	-				+0.1
1,411,751	-				-0.1
1,411,751	-				+0.0
1,411,815	+		GFF4484	0.23	+0.9
1,411,981	+		GFF4484	0.75	+0.4
1,411,981	+		GFF4484	0.75	+0.0
1,411,981	+		GFF4484	0.75	-0.3
1,411,982	-		GFF4484	0.75	+0.2
1,411,982	-		GFF4484	0.75	-1.2
1,411,982	-		GFF4484	0.75	-0.7
1,411,982	-		GFF4484	0.75	+0.8
1,411,996	+		GFF4484	0.79	+0.1
1,411,997	-		GFF4484	0.80	-0.0
1,411,997	-		GFF4484	0.80	-0.4
1,412,238	+		GFF4485	0.44	+0.3
1,412,238	+		GFF4485	0.44	+0.5
1,412,314	-		GFF4485	0.81	-0.1
1,412,314	-		GFF4485	0.81	+0.5
1,412,320	-		GFF4485	0.84	-0.5
1,412,350	-				-0.6
1,412,371	+				-0.3
1,412,372	-				+0.6
1,412,372	-				-0.1
1,412,723	-		GFF4486	0.51	+0.4
1,412,822	-		GFF4486	0.65	+0.1