Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4346

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4344 and GFF4345 are separated by 2 nucleotidesGFF4345 and GFF4346 overlap by 4 nucleotidesGFF4346 and GFF4347 are separated by 54 nucleotides GFF4344 - Ribosome-binding factor A, at 1,275,237 to 1,275,608 GFF4344 GFF4345 - tRNA pseudouridine synthase B (EC 4.2.1.70), at 1,275,611 to 1,276,606 GFF4345 GFF4346 - GTP-binding protein TypA/BipA, at 1,276,603 to 1,278,429 GFF4346 GFF4347 - membrane protein, putative, at 1,278,484 to 1,279,491 GFF4347 Position (kb) 1276 1277 1278 1279Strain fitness (log2 ratio) -2 -1 0 1 2at 1275.842 kb on + strand, within GFF4345at 1275.842 kb on + strand, within GFF4345at 1275.843 kb on - strand, within GFF4345at 1275.843 kb on - strand, within GFF4345at 1275.843 kb on - strand, within GFF4345at 1275.843 kb on - strand, within GFF4345at 1276.025 kb on + strand, within GFF4345at 1276.025 kb on + strand, within GFF4345at 1276.026 kb on - strand, within GFF4345at 1276.026 kb on - strand, within GFF4345at 1276.026 kb on - strand, within GFF4345at 1276.031 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.163 kb on + strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.164 kb on - strand, within GFF4345at 1276.566 kb on + strandat 1276.566 kb on + strandat 1276.567 kb on - strandat 1276.567 kb on - strandat 1276.567 kb on - strandat 1276.723 kb on - strandat 1276.723 kb on - strandat 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.092 kb on + strand, within GFF4346at 1277.093 kb on - strand, within GFF4346at 1277.093 kb on - strand, within GFF4346at 1277.093 kb on - strand, within GFF4346at 1277.093 kb on - strand, within GFF4346at 1277.093 kb on - strand, within GFF4346at 1277.559 kb on + strand, within GFF4346at 1277.560 kb on - strand, within GFF4346at 1277.560 kb on - strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.590 kb on + strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.591 kb on - strand, within GFF4346at 1277.593 kb on - strand, within GFF4346at 1277.749 kb on + strand, within GFF4346at 1277.749 kb on + strand, within GFF4346at 1277.749 kb on + strand, within GFF4346at 1277.749 kb on + strand, within GFF4346at 1277.750 kb on - strand, within GFF4346at 1277.750 kb on - strand, within GFF4346at 1277.938 kb on + strand, within GFF4346at 1278.031 kb on + strand, within GFF4346at 1278.032 kb on - strand, within GFF4346at 1278.109 kb on + strand, within GFF4346at 1278.109 kb on + strand, within GFF4346at 1278.109 kb on + strand, within GFF4346at 1278.109 kb on + strand, within GFF4346at 1278.109 kb on + strand, within GFF4346at 1278.110 kb on - strand, within GFF4346at 1278.110 kb on - strand, within GFF4346at 1278.169 kb on + strand, within GFF4346at 1278.169 kb on + strand, within GFF4346at 1278.169 kb on + strand, within GFF4346at 1278.169 kb on + strand, within GFF4346at 1278.170 kb on - strand, within GFF4346at 1278.170 kb on - strand, within GFF4346at 1278.170 kb on - strand, within GFF4346at 1278.313 kb on + strandat 1278.313 kb on + strandat 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.961 kb on + strand, within GFF4347at 1278.962 kb on - strand, within GFF4347at 1278.962 kb on - strand, within GFF4347at 1278.962 kb on - strand, within GFF4347at 1278.962 kb on - strand, within GFF4347at 1278.962 kb on - strand, within GFF4347at 1278.967 kb on + strand, within GFF4347at 1278.967 kb on + strand, within GFF4347at 1278.967 kb on + strand, within GFF4347at 1278.967 kb on + strand, within GFF4347at 1278.967 kb on + strand, within GFF4347at 1278.968 kb on - strand, within GFF4347at 1278.968 kb on - strand, within GFF4347at 1278.968 kb on - strand, within GFF4347at 1278.968 kb on - strand, within GFF4347at 1278.968 kb on - strand, within GFF4347

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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1,275,842 + GFF4345 0.23 +1.3
1,275,842 + GFF4345 0.23 -0.6
1,275,843 - GFF4345 0.23 +0.3
1,275,843 - GFF4345 0.23 +0.6
1,275,843 - GFF4345 0.23 -0.2
1,275,843 - GFF4345 0.23 +0.3
1,276,025 + GFF4345 0.42 -1.2
1,276,025 + GFF4345 0.42 -0.3
1,276,026 - GFF4345 0.42 +0.2
1,276,026 - GFF4345 0.42 -0.7
1,276,026 - GFF4345 0.42 -0.2
1,276,031 + GFF4345 0.42 -0.6
1,276,163 + GFF4345 0.55 +0.1
1,276,163 + GFF4345 0.55 -1.2
1,276,163 + GFF4345 0.55 +0.8
1,276,163 + GFF4345 0.55 +0.1
1,276,163 + GFF4345 0.55 +0.7
1,276,163 + GFF4345 0.55 +0.9
1,276,163 + GFF4345 0.55 -0.4
1,276,163 + GFF4345 0.55 -0.3
1,276,164 - GFF4345 0.56 -1.0
1,276,164 - GFF4345 0.56 +0.9
1,276,164 - GFF4345 0.56 -1.1
1,276,164 - GFF4345 0.56 -0.3
1,276,164 - GFF4345 0.56 -0.1
1,276,164 - GFF4345 0.56 -0.2
1,276,164 - GFF4345 0.56 +0.1
1,276,164 - GFF4345 0.56 -0.9
1,276,164 - GFF4345 0.56 -1.8
1,276,164 - GFF4345 0.56 +0.6
1,276,164 - GFF4345 0.56 +0.3
1,276,164 - GFF4345 0.56 -0.8
1,276,164 - GFF4345 0.56 -0.6
1,276,566 + +0.4
1,276,566 + +0.4
1,276,567 - +0.2
1,276,567 - -0.1
1,276,567 - -0.2
1,276,723 - -1.0
1,276,723 - -0.4
1,277,092 + GFF4346 0.27 -0.1
1,277,092 + GFF4346 0.27 +0.0
1,277,092 + GFF4346 0.27 +0.6
1,277,092 + GFF4346 0.27 -1.0
1,277,092 + GFF4346 0.27 -0.8
1,277,092 + GFF4346 0.27 -1.8
1,277,092 + GFF4346 0.27 -1.4
1,277,092 + GFF4346 0.27 -1.1
1,277,093 - GFF4346 0.27 -1.2
1,277,093 - GFF4346 0.27 -1.1
1,277,093 - GFF4346 0.27 -0.2
1,277,093 - GFF4346 0.27 -0.8
1,277,093 - GFF4346 0.27 -1.6
1,277,559 + GFF4346 0.52 -0.2
1,277,560 - GFF4346 0.52 -2.7
1,277,560 - GFF4346 0.52 -0.2
1,277,590 + GFF4346 0.54 -0.7
1,277,590 + GFF4346 0.54 -0.6
1,277,590 + GFF4346 0.54 -0.8
1,277,590 + GFF4346 0.54 +0.2
1,277,590 + GFF4346 0.54 -1.5
1,277,590 + GFF4346 0.54 +0.2
1,277,590 + GFF4346 0.54 -0.7
1,277,590 + GFF4346 0.54 -0.2
1,277,591 - GFF4346 0.54 -0.6
1,277,591 - GFF4346 0.54 -1.0
1,277,591 - GFF4346 0.54 -1.8
1,277,591 - GFF4346 0.54 -1.5
1,277,591 - GFF4346 0.54 -0.5
1,277,591 - GFF4346 0.54 -1.8
1,277,591 - GFF4346 0.54 -0.4
1,277,591 - GFF4346 0.54 -0.1
1,277,593 - GFF4346 0.54 -0.9
1,277,749 + GFF4346 0.63 -1.0
1,277,749 + GFF4346 0.63 -0.6
1,277,749 + GFF4346 0.63 -0.8
1,277,749 + GFF4346 0.63 -0.5
1,277,750 - GFF4346 0.63 -0.1
1,277,750 - GFF4346 0.63 -2.1
1,277,938 + GFF4346 0.73 -0.2
1,278,031 + GFF4346 0.78 -0.3
1,278,032 - GFF4346 0.78 -0.7
1,278,109 + GFF4346 0.82 -0.5
1,278,109 + GFF4346 0.82 -1.9
1,278,109 + GFF4346 0.82 -1.0
1,278,109 + GFF4346 0.82 -0.2
1,278,109 + GFF4346 0.82 -1.1
1,278,110 - GFF4346 0.82 -1.3
1,278,110 - GFF4346 0.82 -0.3
1,278,169 + GFF4346 0.86 -0.0
1,278,169 + GFF4346 0.86 -1.2
1,278,169 + GFF4346 0.86 -0.9
1,278,169 + GFF4346 0.86 +0.1
1,278,170 - GFF4346 0.86 -1.4
1,278,170 - GFF4346 0.86 -2.2
1,278,170 - GFF4346 0.86 -0.6
1,278,313 + -0.2
1,278,313 + -2.2
1,278,961 + GFF4347 0.47 +0.3
1,278,961 + GFF4347 0.47 -0.3
1,278,961 + GFF4347 0.47 -0.2
1,278,961 + GFF4347 0.47 -0.7
1,278,961 + GFF4347 0.47 -0.2
1,278,961 + GFF4347 0.47 +0.0
1,278,961 + GFF4347 0.47 +0.7
1,278,961 + GFF4347 0.47 -1.0
1,278,962 - GFF4347 0.47 +0.1
1,278,962 - GFF4347 0.47 -0.2
1,278,962 - GFF4347 0.47 -1.5
1,278,962 - GFF4347 0.47 -0.1
1,278,962 - GFF4347 0.47 +0.6
1,278,967 + GFF4347 0.48 +0.3
1,278,967 + GFF4347 0.48 +1.8
1,278,967 + GFF4347 0.48 -0.2
1,278,967 + GFF4347 0.48 +0.9
1,278,967 + GFF4347 0.48 +0.0
1,278,968 - GFF4347 0.48 -0.9
1,278,968 - GFF4347 0.48 +0.5
1,278,968 - GFF4347 0.48 +0.7
1,278,968 - GFF4347 0.48 -0.6
1,278,968 - GFF4347 0.48 -0.2

Or see this region's nucleotide sequence