Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4321

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,248,861	+		GFF4320	0.35	+1.1
1,248,862	-		GFF4320	0.35	+0.1
1,249,116	+		GFF4320	0.55	+0.7
1,249,116	+		GFF4320	0.55	+0.4
1,249,117	-		GFF4320	0.55	+0.3
1,249,428	+		GFF4320	0.81	+0.0
1,249,428	+		GFF4320	0.81	+0.3
1,249,428	+		GFF4320	0.81	+0.7
1,249,428	+		GFF4320	0.81	+0.0
1,249,429	-		GFF4320	0.81	-0.4
1,249,429	-		GFF4320	0.81	+0.4
1,249,429	-		GFF4320	0.81	-1.2
1,249,429	-		GFF4320	0.81	-0.1
1,249,429	-		GFF4320	0.81	+1.4
1,249,429	-		GFF4320	0.81	-0.4
1,249,716	-				+0.1
1,250,083	-		GFF4321	0.43	-1.4
1,250,130	+		GFF4321	0.49	-1.2
1,250,130	+		GFF4321	0.49	+1.1
1,250,131	-		GFF4321	0.49	-1.9
1,250,131	-		GFF4321	0.49	-1.4
1,250,131	-		GFF4321	0.49	-0.4
1,250,223	+		GFF4321	0.60	-0.6
1,250,224	-		GFF4321	0.60	-0.9
1,250,224	-		GFF4321	0.60	-1.1
1,250,224	-		GFF4321	0.60	-1.3
1,250,353	-		GFF4321	0.76	-0.2
1,250,353	-		GFF4321	0.76	-1.6
1,250,353	-		GFF4321	0.76	-0.7
1,250,421	+		GFF4321	0.84	-1.0
1,250,421	+		GFF4321	0.84	-0.4
1,250,421	+		GFF4321	0.84	-1.2
1,250,421	+		GFF4321	0.84	-0.7
1,250,421	+		GFF4321	0.84	-0.5
1,250,421	+		GFF4321	0.84	-0.5
1,250,422	-		GFF4321	0.84	-0.9
1,250,422	-		GFF4321	0.84	-1.4
1,250,422	-		GFF4321	0.84	-0.5
1,250,422	-		GFF4321	0.84	-0.7
1,250,422	-		GFF4321	0.84	-1.0
1,250,545	+				+0.4
1,250,545	+				-0.1
1,250,546	-				+0.7
1,250,546	-				-0.3
1,250,546	-				+0.3
1,250,546	-				-3.1
1,250,546	-				-0.7
1,250,721	-		GFF4322	0.17	+0.4
1,251,068	+		GFF4322	0.51	+0.2
1,251,068	+		GFF4322	0.51	+0.1
1,251,218	+		GFF4322	0.66	+0.1
1,251,218	+		GFF4322	0.66	-0.0
1,251,218	+		GFF4322	0.66	+0.4
1,251,218	+		GFF4322	0.66	-0.1
1,251,219	-		GFF4322	0.66	+0.6
1,251,219	-		GFF4322	0.66	+0.5
1,251,219	-		GFF4322	0.66	+0.1
1,251,219	-		GFF4322	0.66	-0.1
1,251,219	-		GFF4322	0.66	+1.1
1,251,353	+		GFF4322	0.80	-0.3
1,251,353	+		GFF4322	0.80	+1.0
1,251,353	+		GFF4322	0.80	-1.2