Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4229

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,141,844	+		GFF4228	0.38	-0.0
1,141,844	+		GFF4228	0.38	-0.9
1,141,918	+		GFF4228	0.55	+0.1
1,141,919	-		GFF4228	0.56	-0.4
1,141,919	-		GFF4228	0.56	+0.2
1,141,919	-		GFF4228	0.56	-0.3
1,141,919	-		GFF4228	0.56	+0.8
1,142,148	+				+0.0
1,142,155	+				+0.2
1,142,156	-				+0.4
1,142,291	+				-0.9
1,142,342	+				-2.1
1,142,552	+		GFF4229	0.23	-1.6
1,142,636	+		GFF4229	0.29	-0.7
1,142,637	-		GFF4229	0.29	-0.5
1,142,801	+		GFF4229	0.40	-3.5
1,142,801	+		GFF4229	0.40	+0.4
1,142,801	+		GFF4229	0.40	-0.9
1,142,802	-		GFF4229	0.40	-2.3
1,142,802	-		GFF4229	0.40	-0.8
1,143,183	-		GFF4229	0.66	-1.9
1,143,183	-		GFF4229	0.66	-0.7
1,143,336	-		GFF4229	0.76	-1.4
1,143,593	+				-0.4
1,143,594	-				-0.6
1,143,849	+				-0.2
1,143,849	+				-0.2
1,143,849	+				-0.1
1,143,849	+				-0.3
1,143,849	+				+0.0
1,143,849	+				+0.1
1,143,850	-				-1.8
1,143,850	-				-0.4
1,143,850	-				+0.0
1,143,850	-				-0.4
1,143,850	-				-0.7
1,143,850	-				+0.9
1,143,860	+				+0.2
1,143,860	+				-0.2
1,143,861	-				-0.1
1,143,875	+				+0.6
1,143,876	-				+0.0
1,143,892	+				+0.1
1,144,016	+		GFF4230	0.11	+0.6
1,144,025	+		GFF4230	0.12	-0.0
1,144,025	+		GFF4230	0.12	+0.6
1,144,026	-		GFF4230	0.12	-0.2
1,144,046	+		GFF4230	0.14	+0.9
1,144,046	+		GFF4230	0.14	-0.4
1,144,046	+		GFF4230	0.14	-0.0
1,144,046	+		GFF4230	0.14	+0.3
1,144,046	+		GFF4230	0.14	+1.0
1,144,047	-		GFF4230	0.14	-0.1
1,144,047	-		GFF4230	0.14	+0.1
1,144,047	-		GFF4230	0.14	-0.1
1,144,047	-		GFF4230	0.14	+0.1
1,144,076	+		GFF4230	0.17	-0.2
1,144,076	+		GFF4230	0.17	-0.6
1,144,077	-		GFF4230	0.17	-1.2
1,144,422	-		GFF4230	0.50	+1.4
1,144,422	-		GFF4230	0.50	-0.1
1,144,563	-		GFF4230	0.64	-0.1
1,144,563	-		GFF4230	0.64	+0.1
1,144,577	+		GFF4230	0.65	-0.3
1,144,578	-		GFF4230	0.65	+0.3
1,144,578	-		GFF4230	0.65	-0.9
1,144,578	-		GFF4230	0.65	+2.2
1,144,578	-		GFF4230	0.65	-0.4
1,144,631	+		GFF4230	0.70	+0.8
1,144,631	+		GFF4230	0.70	-0.1
1,144,631	+		GFF4230	0.70	-0.2
1,144,631	+		GFF4230	0.70	-0.5
1,144,631	+		GFF4230	0.70	+0.5
1,144,631	+		GFF4230	0.70	-1.3
1,144,631	+		GFF4230	0.70	+1.5
1,144,631	+		GFF4230	0.70	-0.2
1,144,632	-		GFF4230	0.70	-0.6
1,144,632	-		GFF4230	0.70	-0.1
1,144,632	-		GFF4230	0.70	-0.2
1,144,632	-		GFF4230	0.70	-0.5
1,144,632	-		GFF4230	0.70	+0.4
1,144,632	-		GFF4230	0.70	-1.1
1,144,632	-		GFF4230	0.70	-0.4
1,144,632	-		GFF4230	0.70	-0.7
1,144,632	-		GFF4230	0.70	-1.4
1,144,632	-		GFF4230	0.70	-0.3