Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4184

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,099,381	+		GFF4182	0.90	+0.1
1,099,382	-				-0.4
1,099,517	+				+0.1
1,099,518	-				-0.5
1,099,559	+				-0.0
1,099,560	-				+0.6
1,099,560	-				-0.2
1,099,589	+				-0.4
1,099,608	+		GFF4183	0.11	+0.4
1,099,609	-		GFF4183	0.11	-0.1
1,099,622	-		GFF4183	0.13	-0.2
1,099,742	+		GFF4183	0.30	-0.6
1,099,743	-		GFF4183	0.30	+0.5
1,099,911	-		GFF4183	0.54	+0.5
1,099,911	-		GFF4183	0.54	-0.2
1,099,916	+		GFF4183	0.54	-0.8
1,099,917	-		GFF4183	0.55	+0.0
1,099,918	+		GFF4183	0.55	-0.0
1,099,918	+		GFF4183	0.55	+1.2
1,099,919	-		GFF4183	0.55	+0.7
1,099,952	+		GFF4183	0.60	+0.2
1,100,070	-		GFF4183	0.76	-0.0
1,100,094	+		GFF4183	0.80	+0.0
1,100,177	+				+0.1
1,100,177	+				-0.4
1,100,177	+				+0.3
1,100,177	+				+0.4
1,100,178	-				+0.9
1,100,250	+				+0.1
1,100,251	-				-0.3
1,100,251	-				+0.0
1,100,254	+				-0.2
1,100,254	+				+0.2
1,100,255	-				+1.1
1,100,255	-				+0.3
1,100,255	-				-0.2
1,100,534	-		GFF4184	0.30	+0.8
1,100,579	-		GFF4184	0.35	+0.7
1,100,579	-		GFF4184	0.35	-0.3
1,100,579	-		GFF4184	0.35	-0.2
1,100,588	-		GFF4184	0.36	+0.2
1,100,588	-		GFF4184	0.36	-1.5
1,100,648	+		GFF4184	0.42	+0.8
1,100,772	+		GFF4184	0.54	-0.5
1,100,789	-		GFF4184	0.56	-0.4
1,100,789	-		GFF4184	0.56	-1.5
1,101,013	+		GFF4184	0.79	-0.6
1,101,013	+		GFF4184	0.79	+0.0
1,101,013	+		GFF4184	0.79	-0.3
1,101,013	+		GFF4184	0.79	-0.5
1,101,013	+		GFF4184	0.79	+0.8
1,101,013	+		GFF4184	0.79	-0.3
1,101,015	+		GFF4184	0.79	+0.4
1,101,101	-		GFF4184	0.87	-0.5
1,101,118	+		GFF4184	0.89	-0.2
1,101,119	-		GFF4184	0.89	-0.0
1,101,119	-		GFF4184	0.89	+0.2
1,101,121	+		GFF4184	0.89	+0.7
1,101,121	+		GFF4184	0.89	+0.1
1,101,121	+		GFF4184	0.89	-1.9
1,101,122	-		GFF4184	0.90	-0.2
1,101,122	-		GFF4184	0.90	-0.0
1,101,122	-		GFF4184	0.90	-0.3
1,101,122	-		GFF4184	0.90	+0.5
1,101,122	-		GFF4184	0.90	-0.0
1,101,122	-		GFF4184	0.90	-0.2
1,101,122	-		GFF4184	0.90	-0.4
1,101,277	+				-0.1
1,101,441	+		GFF4185	0.17	+0.5
1,101,441	+		GFF4185	0.17	+0.3
1,101,603	+		GFF4185	0.29	-1.0
1,101,604	-		GFF4185	0.29	+0.4
1,101,604	-		GFF4185	0.29	+0.2
1,101,604	-		GFF4185	0.29	-0.9
1,101,604	-		GFF4185	0.29	-1.4
1,101,605	+		GFF4185	0.29	-0.9
1,101,606	-		GFF4185	0.29	+0.4
1,101,606	-		GFF4185	0.29	+0.2
1,101,606	-		GFF4185	0.29	-0.8
1,101,606	-		GFF4185	0.29	+0.2
1,101,918	+		GFF4185	0.54	-0.4
1,101,965	+		GFF4185	0.57	+0.6
1,101,965	+		GFF4185	0.57	-0.7
1,101,965	+		GFF4185	0.57	-0.3
1,101,965	+		GFF4185	0.57	-0.1
1,101,965	+		GFF4185	0.57	+1.2
1,101,965	+		GFF4185	0.57	+0.3
1,101,966	-		GFF4185	0.57	+0.4
1,101,966	-		GFF4185	0.57	+0.2
1,101,966	-		GFF4185	0.57	+0.3
1,102,017	+		GFF4185	0.61	+0.5
1,102,017	+		GFF4185	0.61	+0.3
1,102,017	+		GFF4185	0.61	+0.5
1,102,017	+		GFF4185	0.61	+0.6
1,102,017	+		GFF4185	0.61	-0.4
1,102,018	-		GFF4185	0.62	-0.3
1,102,018	-		GFF4185	0.62	-0.3
1,102,078	-		GFF4185	0.66	+0.1
1,102,078	-		GFF4185	0.66	-0.1
1,102,078	-		GFF4185	0.66	-0.4
1,102,095	+		GFF4185	0.68	-0.1
1,102,096	-		GFF4185	0.68	-0.1
1,102,096	-		GFF4185	0.68	-0.2
1,102,096	-		GFF4185	0.68	-0.0
1,102,096	-		GFF4185	0.68	-0.4
1,102,145	+		GFF4185	0.71	-0.4
1,102,145	+		GFF4185	0.71	-0.5
1,102,146	-		GFF4185	0.71	+0.9
1,102,146	-		GFF4185	0.71	+0.0
1,102,146	-		GFF4185	0.71	-0.1