Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4167

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,080,277	+		GFF4166	0.24	-0.1
1,080,652	+		GFF4166	0.88	-0.6
1,080,653	-		GFF4166	0.88	+0.1
1,081,488	-		GFF4167	0.16	+0.2
1,081,535	+		GFF4167	0.18	+1.4
1,081,658	+		GFF4167	0.24	-0.8
1,081,659	-		GFF4167	0.25	-0.0
1,081,812	-		GFF4167	0.32	-0.4
1,082,282	+		GFF4167	0.56	+0.7
1,082,282	+		GFF4167	0.56	+0.2
1,082,283	-		GFF4167	0.56	-0.3
1,082,283	-		GFF4167	0.56	-0.4
1,082,318	+		GFF4167	0.58	-0.4
1,082,319	-		GFF4167	0.58	-0.1
1,082,319	-		GFF4167	0.58	+0.3
1,082,354	+		GFF4167	0.60	+1.1
1,082,442	+		GFF4167	0.64	-0.2
1,082,443	-		GFF4167	0.64	-0.2
1,082,443	-		GFF4167	0.64	-0.3
1,082,445	-		GFF4167	0.64	+0.3
1,082,583	+		GFF4167	0.71	-0.1
1,082,584	-		GFF4167	0.71	-0.9
1,082,625	-		GFF4167	0.73	-0.2
1,082,931	+		GFF4167	0.89	+0.5
1,082,932	-		GFF4167	0.89	+0.3
1,082,932	-		GFF4167	0.89	+1.1
1,082,932	-		GFF4167	0.89	-0.0
1,082,975	+				+0.0
1,082,976	-				-0.5
1,083,009	-				+0.3
1,083,155	+				+0.1
1,083,155	+				-0.2
1,083,161	+				+0.3
1,083,170	+				-0.1
1,083,170	+				-0.3
1,083,170	+				-0.6
1,083,171	-				-0.2
1,083,171	-				-0.6
1,083,171	-				-0.4
1,083,171	-				-0.4
1,083,171	-				+0.1
1,083,240	-				-0.9
1,083,268	+				-0.6
1,083,268	+				+1.0
1,083,269	-				+0.2
1,083,357	-				+0.1
1,083,357	-				+0.4
1,083,406	+				-0.2
1,083,407	-				-0.2
1,083,412	+				-0.4
1,083,412	+				-0.3
1,083,412	+				-0.1
1,083,412	+				-0.7
1,083,412	+				-0.3
1,083,412	+				+0.1
1,083,412	+				+1.1
1,083,412	+				+0.2
1,083,412	+				+0.6
1,083,413	-				+0.2
1,083,413	-				+0.3
1,083,413	-				+1.7
1,083,413	-				+0.9
1,083,413	-				-0.0
1,083,413	-				+0.1
1,083,413	-				-0.1
1,083,413	-				+0.6
1,083,413	-				-0.6
1,083,413	-				-0.1
1,083,413	-				-0.4
1,083,413	-				-0.0
1,083,413	-				+0.4
1,083,413	-				+0.0
1,083,413	-				-0.3
1,083,433	+				+0.7
1,083,433	+				+1.0
1,083,433	+				-0.3
1,083,433	+				+0.4
1,083,434	-				+0.6
1,083,434	-				+0.1
1,083,434	-				+0.5
1,083,434	-				-0.0
1,083,434	-				+0.4
1,083,440	+				-0.5
1,083,441	-				-0.3
1,083,533	-				+0.1
1,083,533	-				+0.2
1,083,533	-				+0.2
1,083,533	-				-0.4
1,083,612	+				-1.5
1,083,612	+				-0.1
1,083,612	+				-0.0
1,083,613	-				-1.0
1,083,638	+				+0.8
1,083,638	+				-1.4
1,083,639	-				-0.0
1,083,639	-				+0.2
1,083,639	-				+0.4
1,083,659	-				-0.1
1,083,872	+		GFF4168	0.42	-1.4
1,083,872	+		GFF4168	0.42	-0.7
1,083,872	+		GFF4168	0.42	+0.0
1,083,872	+		GFF4168	0.42	-2.0
1,083,872	+		GFF4168	0.42	-0.6
1,083,873	-		GFF4168	0.42	-0.2
1,083,873	-		GFF4168	0.42	-0.5
1,083,873	-		GFF4168	0.42	-0.2
1,083,873	-		GFF4168	0.42	-0.4
1,083,873	-		GFF4168	0.42	-0.5
1,083,873	-		GFF4168	0.42	-1.9
1,083,965	+		GFF4168	0.56	-0.6
1,083,965	+		GFF4168	0.56	+1.4
1,083,965	+		GFF4168	0.56	-0.8
1,083,966	-		GFF4168	0.56	-0.2
1,084,094	+		GFF4168	0.76	-0.2
1,084,095	-		GFF4168	0.76	-1.6
1,084,095	-		GFF4168	0.76	-0.5
1,084,103	+		GFF4168	0.77	-1.2