Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4132

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,043,214	-		GFF4131	0.72	+0.4
1,043,303	+		GFF4131	0.78	+0.2
1,043,303	+		GFF4131	0.78	-0.1
1,043,351	+		GFF4131	0.81	-0.1
1,043,352	-		GFF4131	0.81	-0.0
1,043,352	-		GFF4131	0.81	-0.6
1,043,381	+		GFF4131	0.83	+0.4
1,043,381	+		GFF4131	0.83	+0.7
1,043,382	-		GFF4131	0.83	-0.5
1,043,382	-		GFF4131	0.83	-0.1
1,043,382	-		GFF4131	0.83	+0.5
1,043,382	-		GFF4131	0.83	+0.2
1,043,382	-		GFF4131	0.83	-0.4
1,043,624	+				+1.3
1,043,624	+				+0.6
1,043,624	+				+0.2
1,043,625	-				+0.0
1,043,774	-				+0.0
1,043,797	+				+0.4
1,043,797	+				+0.2
1,043,798	-				+0.0
1,043,918	+				+0.8
1,043,919	-				-0.1
1,043,919	-				-0.2
1,044,243	-		GFF4132	0.69	-0.1
1,044,374	+				+0.4
1,044,374	+				-0.5
1,044,374	+				-0.4
1,044,374	+				-0.2
1,044,374	+				+0.5
1,044,374	+				-0.6
1,044,375	-				-0.2
1,044,375	-				+0.0
1,044,375	-				-0.4
1,044,375	-				+0.3
1,044,375	-				+0.6
1,044,375	-				-0.9
1,044,375	-				-0.2
1,044,375	-				-0.5
1,044,375	-				+0.1
1,044,375	-				-0.1
1,044,419	+				-0.6
1,044,419	+				-0.2
1,044,419	+				-0.2
1,044,448	+				+0.4
1,044,448	+				-0.2
1,044,448	+				+0.4
1,044,449	-				-0.7
1,044,479	-				-0.1
1,044,715	+				+0.1
1,044,715	+				+1.7
1,044,715	+				-0.6
1,044,716	-				-0.2
1,044,716	-				-2.1
1,044,716	-				-0.6
1,044,716	-				+0.1
1,044,988	+		GFF4133	0.20	+0.1
1,044,988	+		GFF4133	0.20	-0.6
1,044,988	+		GFF4133	0.20	-1.1
1,044,988	+		GFF4133	0.20	-1.0
1,044,988	+		GFF4133	0.20	+0.4
1,044,989	-		GFF4133	0.20	+0.2