Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4129

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,039,325	+		GFF4128	0.28	-0.6
1,039,326	-		GFF4128	0.28	+0.0
1,039,478	+		GFF4128	0.40	+1.0
1,039,478	+		GFF4128	0.40	+0.3
1,039,478	+		GFF4128	0.40	+0.2
1,039,478	+		GFF4128	0.40	+0.2
1,039,478	+		GFF4128	0.40	+0.6
1,039,478	+		GFF4128	0.40	+0.3
1,039,479	-		GFF4128	0.40	-0.6
1,039,479	-		GFF4128	0.40	+0.3
1,039,479	-		GFF4128	0.40	+0.1
1,039,479	-		GFF4128	0.40	-0.0
1,039,479	-		GFF4128	0.40	-0.3
1,039,479	-		GFF4128	0.40	-0.8
1,039,479	-		GFF4128	0.40	-0.3
1,039,479	-		GFF4128	0.40	+0.2
1,039,479	-		GFF4128	0.40	-0.7
1,039,571	+		GFF4128	0.47	+0.7
1,039,571	+		GFF4128	0.47	-0.5
1,039,572	-		GFF4128	0.47	-0.1
1,039,572	-		GFF4128	0.47	-0.3
1,040,039	+		GFF4128	0.82	-0.1
1,040,039	+		GFF4128	0.82	-0.1
1,040,040	-		GFF4128	0.82	+0.2
1,040,040	-		GFF4128	0.82	-0.5
1,040,186	+				-0.4
1,040,186	+				+0.0
1,040,186	+				-0.0
1,040,186	+				+0.2
1,040,187	-				-0.4
1,040,187	-				-0.3
1,040,187	-				+0.4
1,040,187	-				-0.2
1,040,187	-				+0.1
1,040,192	+				+0.1
1,040,192	+				+0.2
1,040,192	+				+0.1
1,040,192	+				-0.7
1,040,192	+				-0.8
1,040,192	+				+0.2
1,040,274	-				-0.7
1,040,373	+				+0.1
1,040,634	+		GFF4129	0.33	+0.0
1,040,635	-		GFF4129	0.33	-0.5
1,040,635	-		GFF4129	0.33	-0.3
1,040,649	+		GFF4129	0.34	-0.0
1,040,649	+		GFF4129	0.34	+0.2
1,040,790	+		GFF4129	0.48	+0.9
1,040,791	-		GFF4129	0.48	-0.0
1,040,791	-		GFF4129	0.48	-0.1
1,040,791	-		GFF4129	0.48	+0.2
1,040,791	-		GFF4129	0.48	+0.5
1,041,063	+		GFF4129	0.76	+0.0
1,041,063	+		GFF4129	0.76	-0.4
1,041,064	-		GFF4129	0.76	+0.1
1,041,081	+		GFF4129	0.78	+0.3
1,041,082	-		GFF4129	0.78	+0.2
1,041,989	+				-0.2
1,041,989	+				-0.2
1,041,990	-				+0.4
1,041,995	+				-0.1
1,041,996	-				+0.4
1,041,996	-				-0.4
1,042,110	-				-0.9
1,042,110	-				-0.9