Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3959 and GFF3960 overlap by 4 nucleotides GFF3960 and GFF3961 overlap by 4 nucleotides GFF3961 and GFF3962 are separated by 7 nucleotides GFF3962 and GFF3963 are separated by 21 nucleotides
GFF3959 - FIG00986182: hypothetical protein, at 873,921 to 875,276
GFF3959
GFF3960 - putative sugar phosphate isomerase/epimerase, at 875,273 to 876,103
GFF3960
GFF3961 - Tricarboxylate transport membrane protein TctA, at 876,100 to 877,599
GFF3961
GFF3962 - hypothetical protein, at 877,607 to 878,104
GFF3962
GFF3963 - Tricarboxylate transport protein TctC, at 878,126 to 879,133
GFF3963
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1 at 875.237 kb on - strand at 875.346 kb on + strand at 875.347 kb on - strand at 875.659 kb on - strand, within GFF3960 at 876.024 kb on + strand at 876.134 kb on + strand at 876.359 kb on + strand, within GFF3961 at 876.359 kb on + strand, within GFF3961 at 876.359 kb on + strand, within GFF3961 at 876.360 kb on - strand, within GFF3961 at 876.533 kb on + strand, within GFF3961 at 876.855 kb on - strand, within GFF3961 at 877.029 kb on - strand, within GFF3961 at 877.029 kb on - strand, within GFF3961 at 877.164 kb on - strand, within GFF3961 at 877.379 kb on + strand, within GFF3961 at 877.380 kb on - strand, within GFF3961 at 877.394 kb on + strand, within GFF3961 at 877.394 kb on + strand, within GFF3961 at 877.394 kb on + strand, within GFF3961 at 877.394 kb on + strand, within GFF3961 at 877.394 kb on + strand, within GFF3961 at 877.395 kb on - strand, within GFF3961 at 877.395 kb on - strand, within GFF3961 at 877.533 kb on - strand at 877.800 kb on + strand, within GFF3962 at 877.801 kb on - strand, within GFF3962 at 877.819 kb on + strand, within GFF3962 at 877.977 kb on + strand, within GFF3962 at 877.978 kb on - strand, within GFF3962 at 878.197 kb on - strand at 878.380 kb on - strand, within GFF3963 at 878.586 kb on + strand, within GFF3963 at 878.587 kb on - strand, within GFF3963 at 878.591 kb on - strand, within GFF3963 at 878.591 kb on - strand, within GFF3963
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 875,237 - +0.6 875,346 + -0.2 875,347 - +0.3 875,659 - GFF3960 0.46 +0.2 876,024 + -0.6 876,134 + +0.8 876,359 + GFF3961 0.17 -0.5 876,359 + GFF3961 0.17 -0.4 876,359 + GFF3961 0.17 -0.2 876,360 - GFF3961 0.17 +0.3 876,533 + GFF3961 0.29 -0.7 876,855 - GFF3961 0.50 -0.0 877,029 - GFF3961 0.62 -0.2 877,029 - GFF3961 0.62 -0.1 877,164 - GFF3961 0.71 -0.8 877,379 + GFF3961 0.85 -0.4 877,380 - GFF3961 0.85 -0.1 877,394 + GFF3961 0.86 -1.0 877,394 + GFF3961 0.86 -0.3 877,394 + GFF3961 0.86 +0.1 877,394 + GFF3961 0.86 +0.4 877,394 + GFF3961 0.86 +0.1 877,395 - GFF3961 0.86 +0.1 877,395 - GFF3961 0.86 -0.4 877,533 - -0.2 877,800 + GFF3962 0.39 +0.1 877,801 - GFF3962 0.39 -0.3 877,819 + GFF3962 0.43 +0.4 877,977 + GFF3962 0.74 -0.1 877,978 - GFF3962 0.74 +0.3 878,197 - +0.2 878,380 - GFF3963 0.25 -0.0 878,586 + GFF3963 0.46 -0.7 878,587 - GFF3963 0.46 -0.1 878,591 - GFF3963 0.46 +0.1 878,591 - GFF3963 0.46 -1.9
Or see this region's nucleotide sequence