Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3830 and GFF3831 overlap by 4 nucleotides GFF3831 and GFF3832 overlap by 4 nucleotides GFF3832 and GFF3833 are separated by 36 nucleotides
GFF3830 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 738,439 to 739,461
GFF3830
GFF3831 - putative 4-hydroxybenzoyl-CoA thioesterase, at 739,458 to 739,910
GFF3831
GFF3832 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 739,907 to 740,629
GFF3832
GFF3833 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 740,666 to 741,013
GFF3833
Position (kb) 739
740 Strain fitness (log2 ratio) -1
0
1 at 738.490 kb on + strand at 738.490 kb on + strand at 738.490 kb on + strand at 738.490 kb on + strand at 738.491 kb on - strand at 738.491 kb on - strand at 738.491 kb on - strand at 738.491 kb on - strand at 738.491 kb on - strand at 738.493 kb on + strand at 738.494 kb on - strand at 738.494 kb on - strand at 738.655 kb on + strand, within GFF3830 at 738.656 kb on - strand, within GFF3830 at 738.656 kb on - strand, within GFF3830 at 738.838 kb on + strand, within GFF3830 at 738.838 kb on + strand, within GFF3830 at 738.838 kb on + strand, within GFF3830 at 738.839 kb on - strand, within GFF3830 at 738.839 kb on - strand, within GFF3830 at 738.839 kb on - strand, within GFF3830 at 738.839 kb on - strand, within GFF3830 at 739.114 kb on + strand, within GFF3830 at 739.115 kb on - strand, within GFF3830 at 739.115 kb on - strand, within GFF3830 at 739.180 kb on + strand, within GFF3830 at 739.180 kb on + strand, within GFF3830 at 739.181 kb on - strand, within GFF3830 at 739.181 kb on - strand, within GFF3830 at 739.181 kb on - strand, within GFF3830 at 739.181 kb on - strand, within GFF3830 at 739.181 kb on - strand, within GFF3830 at 739.181 kb on - strand, within GFF3830 at 739.366 kb on - strand at 739.366 kb on - strand at 739.366 kb on - strand at 739.560 kb on + strand, within GFF3831 at 739.560 kb on + strand, within GFF3831 at 739.560 kb on + strand, within GFF3831 at 739.560 kb on + strand, within GFF3831 at 739.560 kb on + strand, within GFF3831 at 739.560 kb on + strand, within GFF3831 at 739.560 kb on + strand, within GFF3831 at 739.561 kb on - strand, within GFF3831 at 739.561 kb on - strand, within GFF3831 at 739.561 kb on - strand, within GFF3831 at 739.561 kb on - strand, within GFF3831 at 739.585 kb on - strand, within GFF3831 at 739.585 kb on - strand, within GFF3831 at 739.585 kb on - strand, within GFF3831 at 739.587 kb on + strand, within GFF3831 at 739.587 kb on + strand, within GFF3831 at 739.587 kb on + strand, within GFF3831 at 739.587 kb on + strand, within GFF3831 at 739.587 kb on + strand, within GFF3831 at 739.588 kb on - strand, within GFF3831 at 739.588 kb on - strand, within GFF3831 at 739.588 kb on - strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.770 kb on + strand, within GFF3831 at 739.771 kb on - strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.837 kb on - strand, within GFF3831 at 739.837 kb on - strand, within GFF3831 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.177 kb on + strand, within GFF3832 at 740.189 kb on + strand, within GFF3832 at 740.190 kb on - strand, within GFF3832 at 740.195 kb on + strand, within GFF3832 at 740.195 kb on + strand, within GFF3832 at 740.196 kb on - strand, within GFF3832 at 740.196 kb on - strand, within GFF3832 at 740.198 kb on + strand, within GFF3832 at 740.198 kb on + strand, within GFF3832 at 740.199 kb on - strand, within GFF3832 at 740.222 kb on + strand, within GFF3832 at 740.258 kb on + strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.627 kb on + strand at 740.693 kb on + strand at 740.693 kb on + strand at 740.694 kb on - strand at 740.756 kb on + strand, within GFF3833 at 740.756 kb on + strand, within GFF3833 at 740.756 kb on + strand, within GFF3833 at 740.757 kb on - strand, within GFF3833 at 740.772 kb on - strand, within GFF3833 at 740.772 kb on - strand, within GFF3833
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 738,490 + -0.4 738,490 + -0.4 738,490 + +0.8 738,490 + -0.1 738,491 - -0.2 738,491 - +0.1 738,491 - -0.2 738,491 - -0.1 738,491 - -0.1 738,493 + +0.6 738,494 - -1.1 738,494 - +0.1 738,655 + GFF3830 0.21 +0.2 738,656 - GFF3830 0.21 +0.0 738,656 - GFF3830 0.21 +0.1 738,838 + GFF3830 0.39 +0.0 738,838 + GFF3830 0.39 -0.6 738,838 + GFF3830 0.39 -1.4 738,839 - GFF3830 0.39 +0.5 738,839 - GFF3830 0.39 +0.0 738,839 - GFF3830 0.39 +0.5 738,839 - GFF3830 0.39 -0.6 739,114 + GFF3830 0.66 -0.8 739,115 - GFF3830 0.66 +0.2 739,115 - GFF3830 0.66 +0.4 739,180 + GFF3830 0.72 -0.9 739,180 + GFF3830 0.72 -0.2 739,181 - GFF3830 0.73 +1.6 739,181 - GFF3830 0.73 -0.7 739,181 - GFF3830 0.73 -0.6 739,181 - GFF3830 0.73 -0.7 739,181 - GFF3830 0.73 +0.2 739,181 - GFF3830 0.73 +0.1 739,366 - -0.2 739,366 - +0.6 739,366 - -0.1 739,560 + GFF3831 0.23 -0.7 739,560 + GFF3831 0.23 -0.2 739,560 + GFF3831 0.23 -1.0 739,560 + GFF3831 0.23 +1.2 739,560 + GFF3831 0.23 -0.2 739,560 + GFF3831 0.23 -0.1 739,560 + GFF3831 0.23 -0.6 739,561 - GFF3831 0.23 +0.2 739,561 - GFF3831 0.23 +0.6 739,561 - GFF3831 0.23 +0.1 739,561 - GFF3831 0.23 +0.1 739,585 - GFF3831 0.28 -1.2 739,585 - GFF3831 0.28 +0.1 739,585 - GFF3831 0.28 +1.4 739,587 + GFF3831 0.28 -0.4 739,587 + GFF3831 0.28 -0.1 739,587 + GFF3831 0.28 -0.3 739,587 + GFF3831 0.28 -0.3 739,587 + GFF3831 0.28 +0.1 739,588 - GFF3831 0.29 -0.3 739,588 - GFF3831 0.29 -0.0 739,588 - GFF3831 0.29 +0.4 739,692 + GFF3831 0.52 -0.1 739,692 + GFF3831 0.52 -1.1 739,692 + GFF3831 0.52 -0.6 739,692 + GFF3831 0.52 -0.6 739,692 + GFF3831 0.52 +0.4 739,692 + GFF3831 0.52 +0.1 739,770 + GFF3831 0.69 -0.6 739,771 - GFF3831 0.69 +0.1 739,836 + GFF3831 0.83 +0.2 739,836 + GFF3831 0.83 -0.4 739,836 + GFF3831 0.83 -0.6 739,836 + GFF3831 0.83 -0.1 739,837 - GFF3831 0.84 -0.2 739,837 - GFF3831 0.84 +0.0 740,084 + GFF3832 0.24 +0.3 740,084 + GFF3832 0.24 -0.1 740,084 + GFF3832 0.24 +0.3 740,084 + GFF3832 0.24 -0.4 740,084 + GFF3832 0.24 -0.6 740,084 + GFF3832 0.24 +0.3 740,085 - GFF3832 0.25 +0.2 740,085 - GFF3832 0.25 -0.1 740,085 - GFF3832 0.25 -0.2 740,085 - GFF3832 0.25 -0.4 740,085 - GFF3832 0.25 +1.4 740,177 + GFF3832 0.37 -0.4 740,189 + GFF3832 0.39 -0.0 740,190 - GFF3832 0.39 -0.3 740,195 + GFF3832 0.40 +0.5 740,195 + GFF3832 0.40 +0.0 740,196 - GFF3832 0.40 +0.1 740,196 - GFF3832 0.40 -0.1 740,198 + GFF3832 0.40 +0.0 740,198 + GFF3832 0.40 -0.1 740,199 - GFF3832 0.40 -1.5 740,222 + GFF3832 0.44 -0.1 740,258 + GFF3832 0.49 +0.1 740,397 - GFF3832 0.68 -0.2 740,397 - GFF3832 0.68 -0.1 740,397 - GFF3832 0.68 -0.5 740,397 - GFF3832 0.68 -0.4 740,627 + +1.0 740,693 + +0.1 740,693 + -0.0 740,694 - -0.4 740,756 + GFF3833 0.26 -0.4 740,756 + GFF3833 0.26 +0.5 740,756 + GFF3833 0.26 +0.6 740,757 - GFF3833 0.26 -0.2 740,772 - GFF3833 0.30 -0.1 740,772 - GFF3833 0.30 -0.2
Or see this region's nucleotide sequence