Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3749 and GFF3750 are separated by 8 nucleotides GFF3750 and GFF3751 are separated by 37 nucleotides GFF3751 and GFF3752 are separated by 46 nucleotides
GFF3749 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 644,063 to 644,815
GFF3749
GFF3750 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 644,824 to 645,609
GFF3750
GFF3751 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 645,647 to 646,648
GFF3751
GFF3752 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 646,695 to 647,531
GFF3752
Position (kb) 645
646
647 Strain fitness (log2 ratio) -1
0
1 at 644.856 kb on - strand at 644.891 kb on + strand at 644.894 kb on + strand at 645.236 kb on + strand, within GFF3750 at 645.236 kb on + strand, within GFF3750 at 645.236 kb on + strand, within GFF3750 at 645.237 kb on - strand, within GFF3750 at 645.245 kb on + strand, within GFF3750 at 645.245 kb on + strand, within GFF3750 at 645.246 kb on - strand, within GFF3750 at 645.531 kb on - strand at 645.598 kb on + strand at 645.599 kb on - strand at 645.648 kb on + strand at 645.648 kb on + strand at 645.648 kb on + strand at 645.675 kb on + strand at 645.675 kb on + strand at 645.723 kb on + strand at 645.723 kb on + strand at 645.793 kb on - strand, within GFF3751 at 645.864 kb on + strand, within GFF3751 at 646.005 kb on + strand, within GFF3751 at 646.005 kb on + strand, within GFF3751 at 646.006 kb on - strand, within GFF3751 at 646.006 kb on - strand, within GFF3751 at 646.006 kb on - strand, within GFF3751 at 646.194 kb on + strand, within GFF3751 at 646.194 kb on + strand, within GFF3751 at 646.195 kb on - strand, within GFF3751 at 646.195 kb on - strand, within GFF3751 at 646.197 kb on + strand, within GFF3751 at 646.197 kb on + strand, within GFF3751 at 646.198 kb on - strand, within GFF3751 at 646.198 kb on - strand, within GFF3751 at 646.198 kb on - strand, within GFF3751 at 646.212 kb on + strand, within GFF3751 at 646.213 kb on - strand, within GFF3751 at 646.470 kb on + strand, within GFF3751 at 646.536 kb on + strand, within GFF3751 at 646.536 kb on + strand, within GFF3751 at 646.536 kb on + strand, within GFF3751 at 646.536 kb on + strand, within GFF3751 at 646.537 kb on - strand, within GFF3751 at 646.616 kb on + strand at 646.751 kb on - strand at 647.080 kb on + strand, within GFF3752 at 647.081 kb on - strand, within GFF3752 at 647.081 kb on - strand, within GFF3752 at 647.645 kb on + strand at 647.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 644,856 - +0.4 644,891 + +0.0 644,894 + +0.8 645,236 + GFF3750 0.52 -0.7 645,236 + GFF3750 0.52 -1.3 645,236 + GFF3750 0.52 +0.1 645,237 - GFF3750 0.53 +0.1 645,245 + GFF3750 0.54 +0.2 645,245 + GFF3750 0.54 -0.2 645,246 - GFF3750 0.54 -0.3 645,531 - -0.6 645,598 + +0.4 645,599 - +0.2 645,648 + -0.4 645,648 + -0.2 645,648 + +0.1 645,675 + -0.5 645,675 + +0.1 645,723 + +0.7 645,723 + +0.4 645,793 - GFF3751 0.15 +0.1 645,864 + GFF3751 0.22 +0.8 646,005 + GFF3751 0.36 -0.2 646,005 + GFF3751 0.36 -0.8 646,006 - GFF3751 0.36 -0.1 646,006 - GFF3751 0.36 +0.1 646,006 - GFF3751 0.36 -0.3 646,194 + GFF3751 0.55 -0.8 646,194 + GFF3751 0.55 +0.0 646,195 - GFF3751 0.55 +0.4 646,195 - GFF3751 0.55 -0.4 646,197 + GFF3751 0.55 +0.6 646,197 + GFF3751 0.55 +0.4 646,198 - GFF3751 0.55 -0.1 646,198 - GFF3751 0.55 -0.4 646,198 - GFF3751 0.55 +0.2 646,212 + GFF3751 0.56 -0.3 646,213 - GFF3751 0.56 -0.4 646,470 + GFF3751 0.82 -0.6 646,536 + GFF3751 0.89 -0.3 646,536 + GFF3751 0.89 -0.7 646,536 + GFF3751 0.89 -0.3 646,536 + GFF3751 0.89 -0.2 646,537 - GFF3751 0.89 +0.6 646,616 + -0.1 646,751 - -0.5 647,080 + GFF3752 0.46 +0.5 647,081 - GFF3752 0.46 -0.6 647,081 - GFF3752 0.46 -0.8 647,645 + +0.4 647,645 + +0.8
Or see this region's nucleotide sequence