Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3746 and GFF3747 are separated by 14 nucleotides GFF3747 and GFF3748 are separated by 65 nucleotides GFF3748 and GFF3749 are separated by 14 nucleotides GFF3749 and GFF3750 are separated by 8 nucleotides
GFF3746 - Transcriptional regulator, IclR family, at 641,756 to 642,583
GFF3746
GFF3747 - Alpha/beta hydrolase, at 642,598 to 643,377
GFF3747
GFF3748 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 643,443 to 644,048
GFF3748
GFF3749 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 644,063 to 644,815
GFF3749
GFF3750 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 644,824 to 645,609
GFF3750
Position (kb) 643
644
645 Strain fitness (log2 ratio) -1
0
1 at 643.350 kb on - strand at 643.480 kb on + strand at 643.801 kb on + strand, within GFF3748 at 643.867 kb on + strand, within GFF3748 at 643.867 kb on + strand, within GFF3748 at 643.868 kb on - strand, within GFF3748 at 644.346 kb on + strand, within GFF3749 at 644.346 kb on + strand, within GFF3749 at 644.856 kb on - strand at 644.891 kb on + strand at 644.894 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 643,350 - -0.8 643,480 + +0.4 643,801 + GFF3748 0.59 -1.0 643,867 + GFF3748 0.70 -0.4 643,867 + GFF3748 0.70 -1.2 643,868 - GFF3748 0.70 -0.5 644,346 + GFF3749 0.38 -0.1 644,346 + GFF3749 0.38 -0.2 644,856 - +0.4 644,891 + +0.0 644,894 + +0.8
Or see this region's nucleotide sequence