Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF353 and GFF354 are separated by 38 nucleotides GFF354 and GFF355 are separated by 463 nucleotides GFF355 and GFF356 are separated by 53 nucleotides
GFF353 - Organic hydroperoxide resistance protein, at 16,235 to 16,663
GFF353
GFF354 - Organic hydroperoxide resistance transcriptional regulator, at 16,702 to 17,151
GFF354
GFF355 - YihE protein, required for LPS synthesis, at 17,615 to 18,655
GFF355
GFF356 - SAM-dependent methyltransferases, at 18,709 to 19,587
GFF356
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1 at 16.635 kb on + strand at 16.946 kb on + strand, within GFF354 at 16.946 kb on + strand, within GFF354 at 16.946 kb on + strand, within GFF354 at 16.947 kb on - strand, within GFF354 at 16.947 kb on - strand, within GFF354 at 17.013 kb on - strand, within GFF354 at 17.021 kb on + strand, within GFF354 at 17.021 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.055 kb on - strand, within GFF354 at 17.055 kb on - strand, within GFF354 at 17.085 kb on - strand, within GFF354 at 17.164 kb on + strand at 17.165 kb on - strand at 17.424 kb on + strand at 17.425 kb on - strand at 17.760 kb on + strand, within GFF355 at 17.835 kb on + strand, within GFF355 at 17.836 kb on - strand, within GFF355 at 17.836 kb on - strand, within GFF355 at 17.836 kb on - strand, within GFF355 at 18.522 kb on + strand, within GFF355 at 18.522 kb on + strand, within GFF355 at 18.522 kb on + strand, within GFF355 at 18.698 kb on - strand at 18.871 kb on + strand, within GFF356 at 18.871 kb on + strand, within GFF356 at 18.871 kb on + strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.982 kb on + strand, within GFF356 at 19.411 kb on + strand, within GFF356 at 19.411 kb on + strand, within GFF356 at 19.412 kb on - strand, within GFF356 at 19.412 kb on - strand, within GFF356 at 19.479 kb on + strand, within GFF356 at 19.479 kb on + strand, within GFF356 at 19.480 kb on - strand, within GFF356
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 16,635 + +0.2 16,946 + GFF354 0.54 -0.5 16,946 + GFF354 0.54 +0.2 16,946 + GFF354 0.54 -0.0 16,947 - GFF354 0.54 +0.3 16,947 - GFF354 0.54 -1.1 17,013 - GFF354 0.69 -0.7 17,021 + GFF354 0.71 -0.1 17,021 + GFF354 0.71 -1.1 17,054 + GFF354 0.78 +0.1 17,054 + GFF354 0.78 +0.1 17,054 + GFF354 0.78 +0.0 17,054 + GFF354 0.78 -1.0 17,055 - GFF354 0.78 -0.2 17,055 - GFF354 0.78 -0.4 17,085 - GFF354 0.85 +1.0 17,164 + -0.7 17,165 - +0.1 17,424 + +0.6 17,425 - +0.2 17,760 + GFF355 0.14 +0.0 17,835 + GFF355 0.21 -0.8 17,836 - GFF355 0.21 -0.3 17,836 - GFF355 0.21 -0.4 17,836 - GFF355 0.21 +0.1 18,522 + GFF355 0.87 -0.2 18,522 + GFF355 0.87 -0.1 18,522 + GFF355 0.87 -0.0 18,698 - -0.0 18,871 + GFF356 0.18 -0.2 18,871 + GFF356 0.18 -0.0 18,871 + GFF356 0.18 +0.2 18,872 - GFF356 0.19 +1.4 18,872 - GFF356 0.19 -0.2 18,872 - GFF356 0.19 +0.4 18,872 - GFF356 0.19 +0.1 18,872 - GFF356 0.19 -0.2 18,982 + GFF356 0.31 +0.3 19,411 + GFF356 0.80 -0.5 19,411 + GFF356 0.80 -0.4 19,412 - GFF356 0.80 -0.4 19,412 - GFF356 0.80 -0.5 19,479 + GFF356 0.88 +0.4 19,479 + GFF356 0.88 -0.1 19,480 - GFF356 0.88 -0.4
Or see this region's nucleotide sequence