Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF349 and GFF350 are separated by 16 nucleotides GFF350 and GFF351 are separated by 92 nucleotides GFF351 and GFF352 are separated by 13 nucleotides
GFF349 - Hydrogenase transcriptional regulatory protein HoxA, at 12,531 to 13,691
GFF349
GFF350 - FOG: CheY-like receiver, at 13,708 to 14,670
GFF350
GFF351 - contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase binding protein [Brassica napus] GI:1711296, GI:1655824, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin family / jacalin lectin family protein, at 14,763 to 15,104
GFF351
GFF352 - hypothetical protein, at 15,118 to 16,125
GFF352
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1 at 12.711 kb on + strand, within GFF349 at 12.712 kb on - strand, within GFF349 at 12.712 kb on - strand, within GFF349 at 13.029 kb on + strand, within GFF349 at 13.030 kb on - strand, within GFF349 at 13.350 kb on + strand, within GFF349 at 13.671 kb on + strand at 13.672 kb on - strand at 13.759 kb on + strand at 13.759 kb on + strand at 13.760 kb on - strand at 13.841 kb on - strand, within GFF350 at 13.892 kb on - strand, within GFF350 at 13.924 kb on + strand, within GFF350 at 13.925 kb on - strand, within GFF350 at 13.925 kb on - strand, within GFF350 at 14.009 kb on - strand, within GFF350 at 14.009 kb on - strand, within GFF350 at 14.014 kb on + strand, within GFF350 at 14.014 kb on + strand, within GFF350 at 14.014 kb on + strand, within GFF350 at 14.015 kb on - strand, within GFF350 at 15.119 kb on + strand at 15.257 kb on + strand, within GFF352 at 15.257 kb on + strand, within GFF352 at 15.258 kb on - strand, within GFF352 at 15.258 kb on - strand, within GFF352 at 15.258 kb on - strand, within GFF352 at 15.266 kb on + strand, within GFF352 at 15.266 kb on + strand, within GFF352 at 15.266 kb on + strand, within GFF352 at 15.267 kb on - strand, within GFF352 at 15.267 kb on - strand, within GFF352 at 15.267 kb on - strand, within GFF352 at 15.328 kb on + strand, within GFF352 at 15.328 kb on + strand, within GFF352 at 15.329 kb on - strand, within GFF352 at 15.377 kb on + strand, within GFF352 at 15.378 kb on - strand, within GFF352 at 15.378 kb on - strand, within GFF352 at 15.378 kb on - strand, within GFF352 at 15.410 kb on + strand, within GFF352 at 15.410 kb on + strand, within GFF352 at 15.411 kb on - strand, within GFF352 at 15.411 kb on - strand, within GFF352
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 12,711 + GFF349 0.16 +0.3 12,712 - GFF349 0.16 +0.4 12,712 - GFF349 0.16 +0.4 13,029 + GFF349 0.43 +0.1 13,030 - GFF349 0.43 -1.4 13,350 + GFF349 0.71 -0.2 13,671 + -0.5 13,672 - -0.0 13,759 + +0.7 13,759 + -0.2 13,760 - +0.3 13,841 - GFF350 0.14 +1.0 13,892 - GFF350 0.19 -0.4 13,924 + GFF350 0.22 -0.3 13,925 - GFF350 0.23 +0.1 13,925 - GFF350 0.23 -0.1 14,009 - GFF350 0.31 +0.1 14,009 - GFF350 0.31 +0.5 14,014 + GFF350 0.32 -0.5 14,014 + GFF350 0.32 -1.0 14,014 + GFF350 0.32 -0.6 14,015 - GFF350 0.32 -0.1 15,119 + +0.0 15,257 + GFF352 0.14 +0.9 15,257 + GFF352 0.14 +0.1 15,258 - GFF352 0.14 +0.2 15,258 - GFF352 0.14 +0.1 15,258 - GFF352 0.14 -0.0 15,266 + GFF352 0.15 -1.1 15,266 + GFF352 0.15 -0.5 15,266 + GFF352 0.15 +0.6 15,267 - GFF352 0.15 +0.3 15,267 - GFF352 0.15 -1.0 15,267 - GFF352 0.15 -0.3 15,328 + GFF352 0.21 +1.2 15,328 + GFF352 0.21 -0.0 15,329 - GFF352 0.21 +0.0 15,377 + GFF352 0.26 +0.4 15,378 - GFF352 0.26 +0.0 15,378 - GFF352 0.26 -0.1 15,378 - GFF352 0.26 +0.1 15,410 + GFF352 0.29 -0.2 15,410 + GFF352 0.29 -0.3 15,411 - GFF352 0.29 -1.3 15,411 - GFF352 0.29 +0.2
Or see this region's nucleotide sequence