Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF323 and GFF324 are separated by 85 nucleotides GFF324 and GFF325 overlap by 4 nucleotides GFF325 and GFF326 are separated by 70 nucleotides GFF326 and GFF327 overlap by 4 nucleotides
GFF323 - Probable sulfite reductase, at 344,890 to 346,122
GFF323
GFF324 - FIG00537944: hypothetical protein, at 346,208 to 346,810
GFF324
GFF325 - RNA polymerase sigma-70 factor, ECF subfamily, at 346,807 to 347,340
GFF325
GFF326 - putative exported protein, at 347,411 to 347,770
GFF326
GFF327 - Surface antigen gene, at 347,767 to 349,161
GFF327
Position (kb) 346
347 Strain fitness (log2 ratio) -1
0
1 at 345.384 kb on - strand, within GFF323 at 345.557 kb on + strand, within GFF323 at 345.557 kb on + strand, within GFF323 at 345.558 kb on - strand, within GFF323 at 345.854 kb on + strand, within GFF323 at 345.855 kb on - strand, within GFF323 at 345.962 kb on + strand, within GFF323 at 345.963 kb on - strand, within GFF323 at 345.963 kb on - strand, within GFF323 at 345.963 kb on - strand, within GFF323 at 346.384 kb on - strand, within GFF324 at 346.904 kb on - strand, within GFF325 at 346.977 kb on - strand, within GFF325 at 347.289 kb on - strand at 347.310 kb on + strand at 347.390 kb on + strand at 347.391 kb on - strand at 347.658 kb on + strand, within GFF326 at 347.658 kb on + strand, within GFF326 at 347.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 345,384 - GFF323 0.40 +0.9 345,557 + GFF323 0.54 -0.0 345,557 + GFF323 0.54 +1.2 345,558 - GFF323 0.54 -0.2 345,854 + GFF323 0.78 +0.4 345,855 - GFF323 0.78 +0.3 345,962 + GFF323 0.87 +0.2 345,963 - GFF323 0.87 -0.4 345,963 - GFF323 0.87 +1.0 345,963 - GFF323 0.87 +0.5 346,384 - GFF324 0.29 -1.0 346,904 - GFF325 0.18 -0.6 346,977 - GFF325 0.32 +1.2 347,289 - +0.5 347,310 + -0.0 347,390 + -0.1 347,391 - +0.4 347,658 + GFF326 0.69 +0.1 347,658 + GFF326 0.69 +0.3 347,801 + -0.5
Or see this region's nucleotide sequence