Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3019 and GFF3020 are separated by 382 nucleotides GFF3020 and GFF3021 are separated by 4 nucleotides GFF3021 and GFF3022 are separated by 4 nucleotides GFF3022 and GFF3023 are separated by 1 nucleotides
GFF3019 - FIG022199: FAD-binding protein, at 96,264 to 97,601
GFF3019
GFF3020 - hypothetical protein, at 97,984 to 98,100
GFF3020
GFF3021 - Alkanesulfonates transport system permease protein, at 98,105 to 98,932
GFF3021
GFF3022 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 98,937 to 99,749
GFF3022
GFF3023 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 99,751 to 100,776
GFF3023
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.276 kb on + strand, within GFF3019 at 97.277 kb on - strand, within GFF3019 at 97.277 kb on - strand, within GFF3019 at 97.282 kb on + strand, within GFF3019 at 97.282 kb on + strand, within GFF3019 at 97.283 kb on - strand, within GFF3019 at 97.283 kb on - strand, within GFF3019 at 97.283 kb on - strand, within GFF3019 at 97.638 kb on + strand at 97.638 kb on + strand at 97.638 kb on + strand at 97.639 kb on - strand at 97.653 kb on - strand at 97.681 kb on + strand at 97.681 kb on + strand at 97.681 kb on + strand at 97.681 kb on + strand at 97.682 kb on - strand at 97.792 kb on + strand at 97.792 kb on + strand at 97.792 kb on + strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.869 kb on + strand at 97.869 kb on + strand at 97.869 kb on + strand at 97.927 kb on + strand at 97.927 kb on + strand at 97.927 kb on + strand at 97.928 kb on - strand at 97.928 kb on - strand at 97.928 kb on - strand at 97.928 kb on - strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.981 kb on - strand at 97.989 kb on + strand at 97.989 kb on + strand at 97.989 kb on + strand at 97.990 kb on - strand at 98.266 kb on - strand, within GFF3021 at 98.266 kb on - strand, within GFF3021 at 98.266 kb on - strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.293 kb on - strand, within GFF3021 at 98.293 kb on - strand, within GFF3021 at 98.339 kb on + strand, within GFF3021 at 98.339 kb on + strand, within GFF3021 at 98.340 kb on - strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.463 kb on + strand, within GFF3021 at 98.464 kb on + strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.595 kb on + strand, within GFF3021 at 98.595 kb on + strand, within GFF3021 at 98.718 kb on + strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.963 kb on - strand at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.676 kb on + strand at 99.676 kb on + strand at 99.801 kb on - strand at 99.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 97,276 + GFF3019 0.76 +0.1 97,277 - GFF3019 0.76 +0.2 97,277 - GFF3019 0.76 -0.2 97,282 + GFF3019 0.76 -0.9 97,282 + GFF3019 0.76 -0.3 97,283 - GFF3019 0.76 +1.3 97,283 - GFF3019 0.76 -0.3 97,283 - GFF3019 0.76 -0.4 97,638 + -0.0 97,638 + -0.6 97,638 + -0.8 97,639 - -0.1 97,653 - +0.1 97,681 + -0.4 97,681 + -0.0 97,681 + -0.3 97,681 + -0.2 97,682 - +0.3 97,792 + +0.1 97,792 + +0.6 97,792 + +0.9 97,793 - -1.0 97,793 - +0.2 97,793 - -0.0 97,793 - -0.9 97,793 - -0.1 97,869 + -0.3 97,869 + +1.2 97,869 + +0.3 97,927 + -0.9 97,927 + +1.7 97,927 + -0.0 97,928 - -0.5 97,928 - -0.2 97,928 - +0.5 97,928 - -0.1 97,980 + +0.1 97,980 + +0.1 97,980 + +0.0 97,980 + -0.3 97,981 - -0.1 97,989 + -0.0 97,989 + +0.3 97,989 + +0.1 97,990 - -0.2 98,266 - GFF3021 0.19 +0.1 98,266 - GFF3021 0.19 +0.0 98,266 - GFF3021 0.19 +0.1 98,292 + GFF3021 0.23 +0.2 98,292 + GFF3021 0.23 +0.0 98,292 + GFF3021 0.23 -0.2 98,293 - GFF3021 0.23 -1.1 98,293 - GFF3021 0.23 +0.2 98,339 + GFF3021 0.28 +0.2 98,339 + GFF3021 0.28 -0.4 98,340 - GFF3021 0.28 +0.7 98,376 + GFF3021 0.33 +0.5 98,376 + GFF3021 0.33 -0.1 98,376 + GFF3021 0.33 +0.6 98,376 + GFF3021 0.33 +0.0 98,376 + GFF3021 0.33 +0.5 98,377 - GFF3021 0.33 +0.1 98,377 - GFF3021 0.33 +2.2 98,377 - GFF3021 0.33 +0.4 98,463 + GFF3021 0.43 +0.1 98,464 + GFF3021 0.43 -0.3 98,464 - GFF3021 0.43 +0.0 98,464 - GFF3021 0.43 -0.0 98,464 - GFF3021 0.43 +0.1 98,464 - GFF3021 0.43 +0.6 98,464 - GFF3021 0.43 +0.4 98,595 + GFF3021 0.59 +0.1 98,595 + GFF3021 0.59 -0.4 98,718 + GFF3021 0.74 +2.1 98,719 - GFF3021 0.74 -0.0 98,719 - GFF3021 0.74 +1.0 98,719 - GFF3021 0.74 +0.5 98,719 - GFF3021 0.74 -0.3 98,719 - GFF3021 0.74 +0.3 98,719 - GFF3021 0.74 +0.7 98,963 - +0.1 99,496 + GFF3022 0.69 -0.4 99,496 + GFF3022 0.69 +0.7 99,496 + GFF3022 0.69 +1.1 99,496 + GFF3022 0.69 +0.1 99,497 - GFF3022 0.69 -2.9 99,497 - GFF3022 0.69 -0.1 99,497 - GFF3022 0.69 -0.2 99,497 - GFF3022 0.69 +0.1 99,497 - GFF3022 0.69 +0.2 99,676 + +0.2 99,676 + +1.4 99,801 - -0.2 99,801 - -0.3
Or see this region's nucleotide sequence