Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2992 and GFF2993 are separated by 16 nucleotides GFF2993 and GFF2994 are separated by 135 nucleotides
GFF2992 - D-hydantoinase (EC 3.5.2.2), at 72,112 to 73,542
GFF2992
GFF2993 - bll1134; hypothetical protein, at 73,559 to 74,047
GFF2993
GFF2994 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,183 to 75,727
GFF2994
Position (kb) 73
74
75 Strain fitness (log2 ratio) -1
0
1 at 72.559 kb on + strand, within GFF2992 at 72.559 kb on + strand, within GFF2992 at 72.561 kb on + strand, within GFF2992 at 72.561 kb on + strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.577 kb on + strand, within GFF2992 at 72.578 kb on - strand, within GFF2992 at 72.578 kb on - strand, within GFF2992 at 72.919 kb on + strand, within GFF2992 at 72.919 kb on + strand, within GFF2992 at 72.920 kb on - strand, within GFF2992 at 72.920 kb on - strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 73.183 kb on + strand, within GFF2992 at 73.183 kb on + strand, within GFF2992 at 73.184 kb on - strand, within GFF2992 at 73.262 kb on - strand, within GFF2992 at 73.375 kb on + strand, within GFF2992 at 73.376 kb on - strand, within GFF2992 at 73.376 kb on - strand, within GFF2992 at 73.384 kb on + strand, within GFF2992 at 73.385 kb on - strand, within GFF2992 at 73.443 kb on - strand at 73.487 kb on - strand at 73.540 kb on + strand at 73.541 kb on - strand at 73.560 kb on + strand at 73.560 kb on + strand at 73.561 kb on - strand at 73.563 kb on + strand at 73.564 kb on - strand at 73.564 kb on - strand at 73.677 kb on + strand, within GFF2993 at 73.678 kb on - strand, within GFF2993 at 73.678 kb on - strand, within GFF2993 at 73.812 kb on + strand, within GFF2993 at 73.812 kb on + strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.968 kb on + strand, within GFF2993 at 74.163 kb on - strand at 74.651 kb on + strand, within GFF2994 at 74.651 kb on + strand, within GFF2994 at 74.652 kb on - strand, within GFF2994 at 74.696 kb on + strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 72,559 + GFF2992 0.31 +0.0 72,559 + GFF2992 0.31 +0.8 72,561 + GFF2992 0.31 +0.3 72,561 + GFF2992 0.31 -0.1 72,562 - GFF2992 0.31 +0.5 72,562 - GFF2992 0.31 -0.4 72,562 - GFF2992 0.31 +0.1 72,562 - GFF2992 0.31 +0.7 72,577 + GFF2992 0.32 -0.1 72,578 - GFF2992 0.33 -0.1 72,578 - GFF2992 0.33 +0.3 72,919 + GFF2992 0.56 +0.3 72,919 + GFF2992 0.56 +0.2 72,920 - GFF2992 0.56 +1.0 72,920 - GFF2992 0.56 +0.2 72,961 + GFF2992 0.59 -0.9 72,961 + GFF2992 0.59 +0.2 72,961 + GFF2992 0.59 -0.8 72,961 + GFF2992 0.59 -0.9 72,961 + GFF2992 0.59 -0.2 72,962 - GFF2992 0.59 -0.4 72,962 - GFF2992 0.59 -1.4 72,962 - GFF2992 0.59 -0.2 72,962 - GFF2992 0.59 +1.2 72,962 - GFF2992 0.59 +0.2 73,183 + GFF2992 0.75 +0.3 73,183 + GFF2992 0.75 -0.1 73,184 - GFF2992 0.75 +0.7 73,262 - GFF2992 0.80 +1.1 73,375 + GFF2992 0.88 +0.6 73,376 - GFF2992 0.88 +0.8 73,376 - GFF2992 0.88 -0.2 73,384 + GFF2992 0.89 +0.9 73,385 - GFF2992 0.89 +0.7 73,443 - +0.1 73,487 - -1.0 73,540 + +0.5 73,541 - +0.2 73,560 + +0.2 73,560 + -1.3 73,561 - +0.1 73,563 + -0.3 73,564 - -1.0 73,564 - +0.1 73,677 + GFF2993 0.24 -1.0 73,678 - GFF2993 0.24 +0.6 73,678 - GFF2993 0.24 -0.0 73,812 + GFF2993 0.52 -1.4 73,812 + GFF2993 0.52 -0.5 73,813 - GFF2993 0.52 +1.2 73,813 - GFF2993 0.52 +1.0 73,813 - GFF2993 0.52 -0.1 73,813 - GFF2993 0.52 -0.8 73,968 + GFF2993 0.84 +0.1 74,163 - +0.1 74,651 + GFF2994 0.30 +0.0 74,651 + GFF2994 0.30 -0.3 74,652 - GFF2994 0.30 +0.1 74,696 + GFF2994 0.33 +0.1 74,697 - GFF2994 0.33 +0.1 74,697 - GFF2994 0.33 +0.1 74,697 - GFF2994 0.33 -0.2 74,697 - GFF2994 0.33 -0.0 74,697 - GFF2994 0.33 -0.3
Or see this region's nucleotide sequence