Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2892 and GFF2893 are separated by 102 nucleotides GFF2893 and GFF2894 are separated by 7 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides GFF2895 and GFF2896 overlap by 4 nucleotides
GFF2892 - FIG00349859: hypothetical protein, at 481,643 to 482,248
GFF2892
GFF2893 - hypothetical protein, at 482,351 to 482,575
GFF2893
GFF2894 - Putative translation initiation inhibitor, yjgF family, at 482,583 to 482,978
GFF2894
GFF2895 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 482,975 to 484,642
GFF2895
GFF2896 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 484,639 to 485,835
GFF2896
Position (kb) 482
483
484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 482.142 kb on + strand, within GFF2892 at 482.143 kb on - strand, within GFF2892 at 482.285 kb on + strand at 482.285 kb on + strand at 482.285 kb on + strand at 482.285 kb on + strand at 482.285 kb on + strand at 482.286 kb on - strand at 482.286 kb on - strand at 482.286 kb on - strand at 482.729 kb on - strand, within GFF2894 at 482.729 kb on - strand, within GFF2894 at 482.749 kb on + strand, within GFF2894 at 482.749 kb on + strand, within GFF2894 at 482.750 kb on - strand, within GFF2894 at 482.750 kb on - strand, within GFF2894 at 482.750 kb on - strand, within GFF2894 at 483.091 kb on - strand at 483.174 kb on + strand, within GFF2895 at 483.174 kb on + strand, within GFF2895 at 483.174 kb on + strand, within GFF2895 at 483.175 kb on - strand, within GFF2895 at 483.175 kb on - strand, within GFF2895 at 483.286 kb on - strand, within GFF2895 at 483.325 kb on - strand, within GFF2895 at 483.333 kb on + strand, within GFF2895 at 483.334 kb on - strand, within GFF2895 at 483.390 kb on + strand, within GFF2895 at 483.390 kb on + strand, within GFF2895 at 483.391 kb on - strand, within GFF2895 at 483.391 kb on - strand, within GFF2895 at 483.418 kb on - strand, within GFF2895 at 483.730 kb on - strand, within GFF2895 at 483.730 kb on - strand, within GFF2895 at 483.747 kb on + strand, within GFF2895 at 483.802 kb on - strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 484.126 kb on - strand, within GFF2895 at 484.431 kb on + strand, within GFF2895 at 484.432 kb on - strand, within GFF2895 at 484.432 kb on - strand, within GFF2895 at 484.694 kb on + strand at 484.844 kb on + strand, within GFF2896 at 484.901 kb on + strand, within GFF2896 at 484.902 kb on - strand, within GFF2896 at 485.297 kb on + strand, within GFF2896 at 485.465 kb on + strand, within GFF2896
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 482,142 + GFF2892 0.82 +0.1 482,143 - GFF2892 0.83 -1.3 482,285 + -0.2 482,285 + -1.0 482,285 + -0.4 482,285 + +0.3 482,285 + +0.8 482,286 - -0.6 482,286 - -0.1 482,286 - -0.3 482,729 - GFF2894 0.37 -0.6 482,729 - GFF2894 0.37 -2.6 482,749 + GFF2894 0.42 -2.3 482,749 + GFF2894 0.42 -0.9 482,750 - GFF2894 0.42 -1.9 482,750 - GFF2894 0.42 -2.2 482,750 - GFF2894 0.42 -2.0 483,091 - -0.3 483,174 + GFF2895 0.12 -0.1 483,174 + GFF2895 0.12 +1.1 483,174 + GFF2895 0.12 +0.3 483,175 - GFF2895 0.12 +0.2 483,175 - GFF2895 0.12 +0.1 483,286 - GFF2895 0.19 +0.9 483,325 - GFF2895 0.21 +0.4 483,333 + GFF2895 0.21 +1.0 483,334 - GFF2895 0.22 +0.9 483,390 + GFF2895 0.25 +0.3 483,390 + GFF2895 0.25 +0.4 483,391 - GFF2895 0.25 -0.0 483,391 - GFF2895 0.25 +0.2 483,418 - GFF2895 0.27 +0.9 483,730 - GFF2895 0.45 +0.8 483,730 - GFF2895 0.45 -0.3 483,747 + GFF2895 0.46 +0.8 483,802 - GFF2895 0.50 +0.2 483,819 + GFF2895 0.51 -1.2 483,819 + GFF2895 0.51 +0.1 483,819 + GFF2895 0.51 -0.2 483,820 - GFF2895 0.51 +0.1 483,820 - GFF2895 0.51 -0.5 483,820 - GFF2895 0.51 -0.5 484,126 - GFF2895 0.69 +0.3 484,431 + GFF2895 0.87 +0.9 484,432 - GFF2895 0.87 +0.1 484,432 - GFF2895 0.87 +0.2 484,694 + -0.5 484,844 + GFF2896 0.17 -0.3 484,901 + GFF2896 0.22 +0.8 484,902 - GFF2896 0.22 -0.8 485,297 + GFF2896 0.55 +0.9 485,465 + GFF2896 0.69 -1.0
Or see this region's nucleotide sequence