Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2831 and GFF2832 are separated by 88 nucleotides GFF2832 and GFF2906 are separated by 17 nucleotides GFF2906 and GFF2833 are separated by 195 nucleotides GFF2833 and GFF2834 are separated by 52 nucleotides
GFF2831 - DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), at 423,455 to 424,441
GFF2831
GFF2832 - LSU ribosomal protein L17p, at 424,530 to 424,925
GFF2832
GFF2906 - tRNA-Met-CAT, at 424,943 to 425,016
GFF2906
GFF2833 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 425,212 to 426,117
GFF2833
GFF2834 - Probable major facilitator superfamily (MFS) transporter, at 426,170 to 427,759
GFF2834
Position (kb) 425
426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 424.488 kb on + strand at 424.495 kb on + strand at 424.495 kb on + strand at 424.916 kb on + strand at 424.916 kb on + strand at 424.916 kb on + strand at 424.916 kb on + strand at 424.926 kb on + strand at 424.926 kb on + strand at 424.927 kb on - strand at 424.927 kb on - strand at 424.927 kb on - strand at 424.927 kb on - strand at 424.927 kb on - strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 424.931 kb on + strand at 425.022 kb on + strand at 425.022 kb on + strand at 425.022 kb on + strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.023 kb on - strand at 425.058 kb on - strand at 425.094 kb on - strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.139 kb on - strand at 425.242 kb on + strand at 425.243 kb on - strand at 425.472 kb on + strand, within GFF2833 at 425.472 kb on + strand, within GFF2833 at 425.472 kb on + strand, within GFF2833 at 425.472 kb on + strand, within GFF2833 at 425.472 kb on + strand, within GFF2833 at 425.472 kb on + strand, within GFF2833 at 425.472 kb on + strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.473 kb on - strand, within GFF2833 at 425.746 kb on + strand, within GFF2833 at 425.746 kb on + strand, within GFF2833 at 425.746 kb on + strand, within GFF2833 at 425.746 kb on + strand, within GFF2833 at 425.747 kb on - strand, within GFF2833 at 425.747 kb on - strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.956 kb on + strand, within GFF2833 at 425.957 kb on - strand, within GFF2833 at 425.957 kb on - strand, within GFF2833 at 425.957 kb on - strand, within GFF2833 at 425.957 kb on - strand, within GFF2833 at 426.019 kb on + strand, within GFF2833 at 426.019 kb on + strand, within GFF2833 at 426.019 kb on + strand, within GFF2833 at 426.020 kb on - strand, within GFF2833 at 426.020 kb on - strand, within GFF2833 at 426.020 kb on - strand, within GFF2833 at 426.020 kb on - strand, within GFF2833 at 426.115 kb on + strand at 426.115 kb on + strand at 426.116 kb on - strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.158 kb on + strand at 426.159 kb on - strand at 426.159 kb on - strand at 426.159 kb on - strand at 426.201 kb on + strand at 426.201 kb on + strand at 426.202 kb on - strand at 426.419 kb on + strand, within GFF2834 at 426.419 kb on + strand, within GFF2834 at 426.419 kb on + strand, within GFF2834 at 426.419 kb on + strand, within GFF2834 at 426.420 kb on - strand, within GFF2834 at 426.420 kb on - strand, within GFF2834 at 426.420 kb on - strand, within GFF2834 at 426.420 kb on - strand, within GFF2834 at 426.420 kb on - strand, within GFF2834 at 426.827 kb on + strand, within GFF2834 at 426.827 kb on + strand, within GFF2834 at 426.827 kb on + strand, within GFF2834 at 426.828 kb on - strand, within GFF2834 at 426.843 kb on - strand, within GFF2834 at 426.843 kb on - strand, within GFF2834 at 427.031 kb on + strand, within GFF2834 at 427.031 kb on + strand, within GFF2834 at 427.032 kb on - strand, within GFF2834
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 424,488 + -3.7 424,495 + -2.0 424,495 + -0.5 424,916 + +0.7 424,916 + -0.2 424,916 + -0.3 424,916 + -0.7 424,926 + +0.1 424,926 + -0.6 424,927 - -1.0 424,927 - -1.3 424,927 - -1.8 424,927 - -3.1 424,927 - -2.0 424,931 + -3.1 424,931 + -0.2 424,931 + -4.2 424,931 + -2.3 424,931 + -4.6 424,931 + -3.3 424,931 + -2.0 424,931 + -1.6 424,931 + -3.1 424,931 + -0.6 425,022 + -0.9 425,022 + +0.1 425,022 + +0.2 425,023 - -0.4 425,023 - -0.3 425,023 - -0.5 425,023 - -0.3 425,023 - +0.3 425,023 - +0.1 425,023 - +0.1 425,023 - +0.1 425,058 - -0.0 425,094 - +0.2 425,138 + -0.6 425,138 + +0.2 425,138 + +0.7 425,138 + -0.1 425,138 + +0.8 425,138 + -0.1 425,138 + +0.0 425,138 + -1.8 425,138 + -0.2 425,138 + -0.1 425,139 - +0.4 425,242 + +0.2 425,243 - +0.6 425,472 + GFF2833 0.29 -0.5 425,472 + GFF2833 0.29 -1.7 425,472 + GFF2833 0.29 +0.3 425,472 + GFF2833 0.29 -0.1 425,472 + GFF2833 0.29 -0.0 425,472 + GFF2833 0.29 -0.6 425,472 + GFF2833 0.29 +0.0 425,473 - GFF2833 0.29 -0.5 425,473 - GFF2833 0.29 -0.0 425,473 - GFF2833 0.29 -0.3 425,473 - GFF2833 0.29 +0.1 425,473 - GFF2833 0.29 +0.3 425,473 - GFF2833 0.29 +0.3 425,473 - GFF2833 0.29 +1.2 425,746 + GFF2833 0.59 -0.1 425,746 + GFF2833 0.59 -0.2 425,746 + GFF2833 0.59 +0.2 425,746 + GFF2833 0.59 -0.6 425,747 - GFF2833 0.59 +0.1 425,747 - GFF2833 0.59 -0.4 425,956 + GFF2833 0.82 +0.1 425,956 + GFF2833 0.82 -0.2 425,956 + GFF2833 0.82 +0.1 425,956 + GFF2833 0.82 +0.8 425,956 + GFF2833 0.82 +0.9 425,956 + GFF2833 0.82 +0.7 425,956 + GFF2833 0.82 -0.5 425,957 - GFF2833 0.82 +0.2 425,957 - GFF2833 0.82 +0.9 425,957 - GFF2833 0.82 -0.2 425,957 - GFF2833 0.82 +0.1 426,019 + GFF2833 0.89 +0.2 426,019 + GFF2833 0.89 +0.1 426,019 + GFF2833 0.89 +0.4 426,020 - GFF2833 0.89 -0.2 426,020 - GFF2833 0.89 -0.3 426,020 - GFF2833 0.89 +1.8 426,020 - GFF2833 0.89 +0.7 426,115 + +1.0 426,115 + +0.2 426,116 - -0.1 426,158 + -0.6 426,158 + +0.0 426,158 + +0.5 426,158 + -0.5 426,158 + +0.2 426,158 + -0.7 426,158 + -0.6 426,158 + -0.4 426,159 - +0.4 426,159 - +0.2 426,159 - +0.5 426,201 + -0.1 426,201 + +0.5 426,202 - +0.1 426,419 + GFF2834 0.16 +0.2 426,419 + GFF2834 0.16 +1.1 426,419 + GFF2834 0.16 -0.0 426,419 + GFF2834 0.16 -1.0 426,420 - GFF2834 0.16 +0.2 426,420 - GFF2834 0.16 +0.1 426,420 - GFF2834 0.16 -0.1 426,420 - GFF2834 0.16 -0.4 426,420 - GFF2834 0.16 -0.7 426,827 + GFF2834 0.41 -0.2 426,827 + GFF2834 0.41 +1.5 426,827 + GFF2834 0.41 +0.4 426,828 - GFF2834 0.41 -0.2 426,843 - GFF2834 0.42 -1.8 426,843 - GFF2834 0.42 +0.4 427,031 + GFF2834 0.54 +0.6 427,031 + GFF2834 0.54 +0.3 427,032 - GFF2834 0.54 +0.2
Or see this region's nucleotide sequence