Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF25 and GFF26 are separated by 119 nucleotides GFF26 and GFF27 are separated by 104 nucleotides GFF27 and GFF28 are separated by 12 nucleotides GFF28 and GFF29 are separated by 174 nucleotides
GFF25 - putative monooxygenase, at 22,647 to 24,191
GFF25
GFF26 - hypothetical protein, at 24,311 to 25,072
GFF26
GFF27 - Pca regulon regulatory protein PcaR, at 25,177 to 25,941
GFF27
GFF28 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 25,954 to 26,481
GFF28
GFF29 - Transcriptional regulator, MarR family, at 26,656 to 27,123
GFF29
Position (kb) 25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.491 kb on + strand, within GFF26 at 24.927 kb on - strand, within GFF26 at 24.927 kb on - strand, within GFF26 at 24.927 kb on - strand, within GFF26 at 25.057 kb on + strand at 25.057 kb on + strand at 25.057 kb on + strand at 25.057 kb on + strand at 25.058 kb on - strand at 25.294 kb on + strand, within GFF27 at 25.295 kb on - strand, within GFF27 at 25.321 kb on + strand, within GFF27 at 25.322 kb on - strand, within GFF27 at 25.385 kb on - strand, within GFF27 at 25.390 kb on + strand, within GFF27 at 25.390 kb on + strand, within GFF27 at 25.391 kb on - strand, within GFF27 at 25.391 kb on - strand, within GFF27 at 25.501 kb on + strand, within GFF27 at 25.501 kb on + strand, within GFF27 at 25.501 kb on + strand, within GFF27 at 25.501 kb on + strand, within GFF27 at 25.502 kb on - strand, within GFF27 at 25.502 kb on - strand, within GFF27 at 25.570 kb on + strand, within GFF27 at 25.570 kb on + strand, within GFF27 at 25.570 kb on + strand, within GFF27 at 25.571 kb on - strand, within GFF27 at 25.726 kb on + strand, within GFF27 at 25.726 kb on + strand, within GFF27 at 25.727 kb on - strand, within GFF27 at 25.727 kb on - strand, within GFF27 at 25.852 kb on + strand, within GFF27 at 25.853 kb on - strand, within GFF27 at 26.313 kb on - strand, within GFF28 at 26.313 kb on - strand, within GFF28 at 26.313 kb on - strand, within GFF28 at 26.378 kb on + strand, within GFF28 at 26.532 kb on - strand at 26.547 kb on + strand at 26.555 kb on - strand at 26.657 kb on + strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 24,491 + GFF26 0.24 -1.9 24,927 - GFF26 0.81 +0.3 24,927 - GFF26 0.81 +0.0 24,927 - GFF26 0.81 -0.0 25,057 + +0.1 25,057 + -0.9 25,057 + +0.3 25,057 + +0.7 25,058 - -0.1 25,294 + GFF27 0.15 +0.5 25,295 - GFF27 0.15 -0.5 25,321 + GFF27 0.19 +0.2 25,322 - GFF27 0.19 -1.9 25,385 - GFF27 0.27 +0.4 25,390 + GFF27 0.28 +0.2 25,390 + GFF27 0.28 +0.2 25,391 - GFF27 0.28 +0.3 25,391 - GFF27 0.28 +0.4 25,501 + GFF27 0.42 +0.1 25,501 + GFF27 0.42 -0.2 25,501 + GFF27 0.42 +0.5 25,501 + GFF27 0.42 -0.8 25,502 - GFF27 0.42 -0.5 25,502 - GFF27 0.42 +0.6 25,570 + GFF27 0.51 +0.1 25,570 + GFF27 0.51 +0.4 25,570 + GFF27 0.51 -0.2 25,571 - GFF27 0.52 +0.5 25,726 + GFF27 0.72 -0.8 25,726 + GFF27 0.72 +0.1 25,727 - GFF27 0.72 +1.6 25,727 - GFF27 0.72 +0.2 25,852 + GFF27 0.88 +0.6 25,853 - GFF27 0.88 +0.6 26,313 - GFF28 0.68 +0.1 26,313 - GFF28 0.68 -0.9 26,313 - GFF28 0.68 +0.3 26,378 + GFF28 0.80 -0.3 26,532 - -0.5 26,547 + +2.2 26,555 - -0.8 26,657 + -0.3 26,658 - -0.8 26,658 - +0.1 26,658 - +0.0
Or see this region's nucleotide sequence