Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2648 and GFF2649 are separated by 64 nucleotides GFF2649 and GFF2650 are separated by 9 nucleotides GFF2650 and GFF2651 overlap by 4 nucleotides
GFF2648 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 242,857 to 243,825
GFF2648
GFF2649 - Benzoate transport protein, at 243,890 to 245,074
GFF2649
GFF2650 - Glutathione synthetase (EC 6.3.2.3), at 245,084 to 246,031
GFF2650
GFF2651 - hypothetical protein, at 246,028 to 246,282
GFF2651
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -2
-1
0
1 at 242.980 kb on + strand, within GFF2648 at 242.980 kb on + strand, within GFF2648 at 242.980 kb on + strand, within GFF2648 at 242.981 kb on - strand, within GFF2648 at 242.981 kb on - strand, within GFF2648 at 243.301 kb on + strand, within GFF2648 at 243.301 kb on + strand, within GFF2648 at 243.301 kb on + strand, within GFF2648 at 243.301 kb on + strand, within GFF2648 at 243.301 kb on + strand, within GFF2648 at 243.302 kb on - strand, within GFF2648 at 243.457 kb on + strand, within GFF2648 at 243.457 kb on + strand, within GFF2648 at 243.457 kb on + strand, within GFF2648 at 243.457 kb on + strand, within GFF2648 at 243.458 kb on - strand, within GFF2648 at 243.458 kb on - strand, within GFF2648 at 243.787 kb on + strand at 243.824 kb on - strand at 243.824 kb on - strand at 243.824 kb on - strand at 243.824 kb on - strand at 244.370 kb on + strand, within GFF2649 at 244.436 kb on + strand, within GFF2649 at 244.437 kb on - strand, within GFF2649 at 244.437 kb on - strand, within GFF2649 at 244.437 kb on - strand, within GFF2649 at 244.562 kb on - strand, within GFF2649 at 244.614 kb on - strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.790 kb on + strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.791 kb on - strand, within GFF2649 at 244.793 kb on - strand, within GFF2649 at 245.048 kb on + strand at 245.049 kb on - strand at 245.375 kb on + strand, within GFF2650 at 245.375 kb on + strand, within GFF2650 at 245.684 kb on + strand, within GFF2650
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 242,980 + GFF2648 0.13 -0.1 242,980 + GFF2648 0.13 -0.1 242,980 + GFF2648 0.13 -0.4 242,981 - GFF2648 0.13 -0.2 242,981 - GFF2648 0.13 -0.6 243,301 + GFF2648 0.46 -0.4 243,301 + GFF2648 0.46 -0.2 243,301 + GFF2648 0.46 -0.7 243,301 + GFF2648 0.46 -0.7 243,301 + GFF2648 0.46 -0.2 243,302 - GFF2648 0.46 +0.2 243,457 + GFF2648 0.62 -0.3 243,457 + GFF2648 0.62 +0.3 243,457 + GFF2648 0.62 +0.0 243,457 + GFF2648 0.62 +0.6 243,458 - GFF2648 0.62 -0.6 243,458 - GFF2648 0.62 -1.2 243,787 + -0.1 243,824 - +0.7 243,824 - -0.2 243,824 - -0.2 243,824 - +0.9 244,370 + GFF2649 0.41 -0.9 244,436 + GFF2649 0.46 +0.0 244,437 - GFF2649 0.46 +0.8 244,437 - GFF2649 0.46 +0.0 244,437 - GFF2649 0.46 +0.1 244,562 - GFF2649 0.57 +0.8 244,614 - GFF2649 0.61 -0.0 244,790 + GFF2649 0.76 +0.6 244,790 + GFF2649 0.76 -0.3 244,790 + GFF2649 0.76 -2.3 244,790 + GFF2649 0.76 -0.0 244,790 + GFF2649 0.76 -0.1 244,790 + GFF2649 0.76 +0.5 244,790 + GFF2649 0.76 -0.9 244,790 + GFF2649 0.76 -0.7 244,790 + GFF2649 0.76 -0.3 244,791 - GFF2649 0.76 +0.3 244,791 - GFF2649 0.76 +0.8 244,791 - GFF2649 0.76 -0.3 244,791 - GFF2649 0.76 -0.7 244,791 - GFF2649 0.76 +0.1 244,791 - GFF2649 0.76 -0.1 244,793 - GFF2649 0.76 -0.3 245,048 + +0.1 245,049 - -0.0 245,375 + GFF2650 0.31 -0.0 245,375 + GFF2650 0.31 +0.1 245,684 + GFF2650 0.63 -0.3
Or see this region's nucleotide sequence