Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2578

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
170,781	+				+0.5
170,781	+				+0.1
170,781	+				+0.1
170,782	-				-0.1
170,874	-				-0.1
171,277	+		GFF2578	0.44	-0.3
171,277	+		GFF2578	0.44	+0.7
171,277	+		GFF2578	0.44	-0.1
171,277	+		GFF2578	0.44	-0.1
171,277	+		GFF2578	0.44	-0.3
171,718	-				-1.4
172,140	+		GFF2579	0.35	+0.6
172,141	-		GFF2579	0.35	+0.1
172,665	+		GFF2579	0.73	-0.1
172,665	+		GFF2579	0.73	+0.1