Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2572 and GFF2573 are separated by 221 nucleotides GFF2573 and GFF2574 overlap by 1 nucleotides GFF2574 and GFF2575 overlap by 1 nucleotides
GFF2572 - Uncharacterized protein with LysM domain, COG1652, at 164,099 to 165,340
GFF2572
GFF2573 - Peptide deformylase (EC 3.5.1.88), at 165,562 to 166,083
GFF2573
GFF2574 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 166,083 to 167,063
GFF2574
GFF2575 - Branched-chain amino acid transport protein AzlC, at 167,063 to 167,806
GFF2575
Position (kb) 165
166
167 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 164.592 kb on + strand, within GFF2572 at 164.592 kb on + strand, within GFF2572 at 164.592 kb on + strand, within GFF2572 at 164.592 kb on + strand, within GFF2572 at 164.592 kb on + strand, within GFF2572 at 164.592 kb on + strand, within GFF2572 at 164.593 kb on - strand, within GFF2572 at 164.722 kb on - strand, within GFF2572 at 164.737 kb on - strand, within GFF2572 at 164.991 kb on + strand, within GFF2572 at 164.991 kb on + strand, within GFF2572 at 164.991 kb on + strand, within GFF2572 at 164.992 kb on - strand, within GFF2572 at 164.992 kb on - strand, within GFF2572 at 165.009 kb on + strand, within GFF2572 at 165.009 kb on + strand, within GFF2572 at 165.129 kb on + strand, within GFF2572 at 165.129 kb on + strand, within GFF2572 at 165.129 kb on + strand, within GFF2572 at 165.129 kb on + strand, within GFF2572 at 165.129 kb on + strand, within GFF2572 at 165.130 kb on - strand, within GFF2572 at 165.130 kb on - strand, within GFF2572 at 165.408 kb on + strand at 165.462 kb on + strand at 165.514 kb on + strand at 165.515 kb on - strand at 165.688 kb on + strand, within GFF2573 at 165.688 kb on + strand, within GFF2573 at 165.688 kb on + strand, within GFF2573 at 165.688 kb on + strand, within GFF2573 at 165.688 kb on + strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.689 kb on - strand, within GFF2573 at 165.865 kb on + strand, within GFF2573 at 165.865 kb on + strand, within GFF2573 at 165.866 kb on - strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.009 kb on + strand, within GFF2573 at 166.010 kb on - strand, within GFF2573 at 166.010 kb on - strand, within GFF2573 at 166.010 kb on - strand, within GFF2573 at 166.293 kb on + strand, within GFF2574 at 166.294 kb on - strand, within GFF2574 at 166.365 kb on + strand, within GFF2574 at 166.365 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 164,592 + GFF2572 0.40 -0.4 164,592 + GFF2572 0.40 -0.0 164,592 + GFF2572 0.40 -0.2 164,592 + GFF2572 0.40 -0.2 164,592 + GFF2572 0.40 -0.0 164,592 + GFF2572 0.40 -0.1 164,593 - GFF2572 0.40 +0.1 164,722 - GFF2572 0.50 +0.2 164,737 - GFF2572 0.51 +1.2 164,991 + GFF2572 0.72 +0.2 164,991 + GFF2572 0.72 +0.0 164,991 + GFF2572 0.72 +0.2 164,992 - GFF2572 0.72 +0.4 164,992 - GFF2572 0.72 +0.1 165,009 + GFF2572 0.73 -2.0 165,009 + GFF2572 0.73 +0.2 165,129 + GFF2572 0.83 +0.9 165,129 + GFF2572 0.83 -1.2 165,129 + GFF2572 0.83 -0.4 165,129 + GFF2572 0.83 -0.5 165,129 + GFF2572 0.83 +0.0 165,130 - GFF2572 0.83 +0.1 165,130 - GFF2572 0.83 -0.2 165,408 + -0.1 165,462 + +1.3 165,514 + +0.1 165,515 - +0.1 165,688 + GFF2573 0.24 -1.7 165,688 + GFF2573 0.24 -2.2 165,688 + GFF2573 0.24 -1.9 165,688 + GFF2573 0.24 -3.0 165,688 + GFF2573 0.24 -1.4 165,689 - GFF2573 0.24 -1.7 165,689 - GFF2573 0.24 -1.7 165,689 - GFF2573 0.24 -0.6 165,689 - GFF2573 0.24 -3.7 165,689 - GFF2573 0.24 -1.3 165,689 - GFF2573 0.24 -3.3 165,689 - GFF2573 0.24 -3.0 165,689 - GFF2573 0.24 -1.7 165,689 - GFF2573 0.24 -2.7 165,689 - GFF2573 0.24 -1.9 165,689 - GFF2573 0.24 -1.9 165,689 - GFF2573 0.24 -2.8 165,689 - GFF2573 0.24 -2.0 165,689 - GFF2573 0.24 -2.4 165,865 + GFF2573 0.58 -2.6 165,865 + GFF2573 0.58 -1.9 165,866 - GFF2573 0.58 -2.4 166,009 + GFF2573 0.86 -5.2 166,009 + GFF2573 0.86 -2.3 166,009 + GFF2573 0.86 -2.4 166,009 + GFF2573 0.86 -2.6 166,009 + GFF2573 0.86 -2.2 166,009 + GFF2573 0.86 -2.0 166,009 + GFF2573 0.86 -2.4 166,010 - GFF2573 0.86 -1.7 166,010 - GFF2573 0.86 -2.6 166,010 - GFF2573 0.86 -3.6 166,293 + GFF2574 0.21 -0.6 166,294 - GFF2574 0.22 -2.9 166,365 + GFF2574 0.29 -1.6 166,365 + GFF2574 0.29 -1.6 166,704 + GFF2574 0.63 -2.5 166,704 + GFF2574 0.63 -2.2 166,704 + GFF2574 0.63 -2.8 166,704 + GFF2574 0.63 -2.7 166,704 + GFF2574 0.63 -3.2 166,704 + GFF2574 0.63 -2.6 166,704 + GFF2574 0.63 -2.7 166,705 - GFF2574 0.63 -1.6 166,705 - GFF2574 0.63 -3.4 166,705 - GFF2574 0.63 -1.4 166,705 - GFF2574 0.63 -2.6 166,705 - GFF2574 0.63 -2.7 166,705 - GFF2574 0.63 -0.6
Or see this region's nucleotide sequence