Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2562

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
150,274	+		GFF2560	0.41	-0.1
150,275	-		GFF2560	0.41	-0.6
150,544	+		GFF2560	0.74	-0.5
150,544	+		GFF2560	0.74	-0.7
150,545	-		GFF2560	0.75	-0.6
150,545	-		GFF2560	0.75	+0.2
150,545	-		GFF2560	0.75	-0.6
150,553	+		GFF2560	0.75	-0.9
150,553	+		GFF2560	0.75	-0.6
150,553	+		GFF2560	0.75	-1.2
150,554	-		GFF2560	0.76	-0.2
150,554	-		GFF2560	0.76	-1.0
150,649	+		GFF2560	0.87	-0.5
150,649	+		GFF2560	0.87	+0.4
150,650	-		GFF2560	0.87	-0.3
150,986	+		GFF2561	0.49	-0.8
150,986	+		GFF2561	0.49	-0.3
150,986	+		GFF2561	0.49	-0.0
150,986	+		GFF2561	0.49	+0.4
150,986	+		GFF2561	0.49	+1.0
150,986	+		GFF2561	0.49	-0.6
150,986	+		GFF2561	0.49	-1.1
150,986	+		GFF2561	0.49	+0.3
150,986	+		GFF2561	0.49	-0.3
150,986	+		GFF2561	0.49	-0.6
150,986	+		GFF2561	0.49	-0.1
150,987	-		GFF2561	0.49	-0.3
150,987	-		GFF2561	0.49	-0.7
150,987	-		GFF2561	0.49	+0.8
150,987	-		GFF2561	0.49	-0.7
150,987	-		GFF2561	0.49	+1.4
150,987	-		GFF2561	0.49	-0.6
151,237	+				-1.4
151,237	+				-0.8
151,237	+				+0.0
151,238	-				-0.8
151,238	-				-1.0
151,238	-				-0.8
151,238	-				-0.8
151,238	-				+0.7
151,238	-				-0.2
151,238	-				-0.1
151,255	+				-0.7
151,255	+				-0.6
151,255	+				+1.4
151,255	+				-0.9
151,255	+				-1.1
151,256	-				-0.1
151,256	-				-0.9
151,288	+		GFF2562	0.11	+0.7
151,288	+		GFF2562	0.11	-0.6
151,288	+		GFF2562	0.11	-2.0
151,288	+		GFF2562	0.11	+0.4
151,288	+		GFF2562	0.11	-2.6
151,288	+		GFF2562	0.11	-0.7
151,288	+		GFF2562	0.11	-0.5
151,289	-		GFF2562	0.11	-0.3
151,289	-		GFF2562	0.11	+2.0
151,289	-		GFF2562	0.11	-1.0
151,289	-		GFF2562	0.11	-0.4
151,294	+		GFF2562	0.12	-0.4
151,294	+		GFF2562	0.12	-0.6
151,294	+		GFF2562	0.12	-0.3
151,294	+		GFF2562	0.12	-0.8
151,294	+		GFF2562	0.12	-0.9
151,294	+		GFF2562	0.12	+1.1
151,294	+		GFF2562	0.12	+2.4
151,295	-		GFF2562	0.12	-0.8
151,295	-		GFF2562	0.12	-0.8
151,295	-		GFF2562	0.12	-1.3
151,295	-		GFF2562	0.12	-0.3
151,295	-		GFF2562	0.12	-1.1
151,295	-		GFF2562	0.12	+0.9
151,295	-		GFF2562	0.12	-0.8
151,295	-		GFF2562	0.12	+0.6
151,315	+		GFF2562	0.15	+0.3
151,315	+		GFF2562	0.15	-0.0
151,315	+		GFF2562	0.15	+0.0
151,316	-		GFF2562	0.15	+0.1
151,316	-		GFF2562	0.15	-0.4
152,030	-				-1.4
152,030	-				-1.1
152,030	-				+0.7
152,030	-				-0.6
152,030	-				-0.3
152,030	-				-1.3
152,056	+				-0.7
152,056	+				-0.9
152,057	-				-0.5
152,057	-				-0.3
152,057	-				+0.0
152,057	-				-0.2
152,060	+				-0.6
152,060	+				-0.9
152,061	-				-1.0
152,061	-				-0.8
152,089	+		GFF2563	0.13	+0.4
152,090	-		GFF2563	0.14	+1.0
152,090	-		GFF2563	0.14	-0.4
152,090	-		GFF2563	0.14	-1.4
152,100	-		GFF2563	0.15	+0.3
152,387	-		GFF2563	0.64	-1.7
152,645	+				-0.7
152,646	-				-0.5
152,646	-				+0.2
152,646	-				+0.0
152,646	-				-0.0
152,707	+				-0.0
152,707	+				-0.4
152,708	-				-0.4
152,708	-				+1.4
152,708	-				-0.1
152,746	-				+0.1
152,770	-				+1.0
152,803	+				+0.0
152,803	+				+0.1
152,803	+				+0.5
152,804	-				+0.3
152,804	-				+0.2
152,804	-				-0.8
152,831	+				+0.0
152,831	+				-1.6
152,832	-				-0.6
152,842	-				+0.7