Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2300

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,184,318	+		GFF2298	0.44	+0.1
1,184,319	-		GFF2298	0.44	-0.9
1,184,319	-		GFF2298	0.44	+1.0
1,184,624	+		GFF2298	0.80	-0.4
1,184,624	+		GFF2298	0.80	-0.6
1,184,893	+		GFF2299	0.25	+0.0
1,184,893	+		GFF2299	0.25	+0.2
1,184,894	-		GFF2299	0.25	-0.5
1,184,894	-		GFF2299	0.25	+0.2
1,184,894	-		GFF2299	0.25	-1.0
1,185,471	+		GFF2300	0.19	+1.0
1,185,493	-		GFF2300	0.21	+0.5
1,185,766	-		GFF2300	0.43	-0.3
1,185,766	-		GFF2300	0.43	-0.2
1,185,945	+		GFF2300	0.58	+0.4
1,185,945	+		GFF2300	0.58	-0.4
1,185,946	-		GFF2300	0.58	-0.5
1,185,946	-		GFF2300	0.58	+0.1
1,185,946	-		GFF2300	0.58	+0.1
1,185,946	-		GFF2300	0.58	+0.0
1,186,098	+		GFF2300	0.71	-0.9
1,186,098	+		GFF2300	0.71	-0.1
1,186,140	+		GFF2300	0.74	+0.3
1,186,140	+		GFF2300	0.74	+0.3
1,186,140	+		GFF2300	0.74	+0.3
1,186,140	+		GFF2300	0.74	+0.0
1,186,141	-		GFF2300	0.74	+0.2
1,186,141	-		GFF2300	0.74	+1.0
1,186,141	-		GFF2300	0.74	+1.0
1,186,174	-		GFF2300	0.77	+0.7
1,186,174	-		GFF2300	0.77	-0.7
1,186,344	+				+1.5
1,186,344	+				+0.4
1,186,344	+				-0.2
1,186,345	-				-0.2
1,186,345	-				+0.1
1,186,566	+		GFF2301	0.24	-0.0
1,186,620	+		GFF2301	0.38	+0.5
1,186,621	-		GFF2301	0.39	-0.2
1,186,684	-		GFF2301	0.56	-0.6
1,186,684	-		GFF2301	0.56	-0.1
1,186,684	-		GFF2301	0.56	+1.4
1,187,150	-				+0.1
1,187,152	-				+0.3
1,187,168	-				+0.5
1,187,168	-				-0.4