Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1882

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1880 and GFF1881 are separated by 15 nucleotidesGFF1881 and GFF1882 are separated by 10 nucleotidesGFF1882 and GFF1883 are separated by 13 nucleotidesGFF1883 and GFF1884 are separated by 6 nucleotides GFF1880 - Putative threonine efflux protein, at 743,986 to 744,621 GFF1880 GFF1881 - Exodeoxyribonuclease III (EC 3.1.11.2), at 744,637 to 745,428 GFF1881 GFF1882 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 745,439 to 746,155 GFF1882 GFF1883 - hypothetical protein, at 746,169 to 746,852 GFF1883 GFF1884 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 746,859 to 748,313 GFF1884 Position (kb) 745 746 747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 744.593 kb on + strandat 744.594 kb on - strandat 744.594 kb on - strandat 744.653 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.779 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.845 kb on + strand, within GFF1881at 744.846 kb on - strand, within GFF1881at 744.846 kb on - strand, within GFF1881at 745.025 kb on + strand, within GFF1881at 745.026 kb on - strand, within GFF1881at 745.046 kb on + strand, within GFF1881at 745.046 kb on + strand, within GFF1881at 745.047 kb on - strand, within GFF1881at 745.047 kb on - strand, within GFF1881at 745.047 kb on - strand, within GFF1881at 745.091 kb on + strand, within GFF1881at 745.091 kb on + strand, within GFF1881at 745.091 kb on + strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.178 kb on + strand, within GFF1881at 745.215 kb on - strand, within GFF1881at 745.215 kb on - strand, within GFF1881at 745.215 kb on - strand, within GFF1881at 745.232 kb on + strand, within GFF1881at 745.232 kb on + strand, within GFF1881at 745.233 kb on - strand, within GFF1881at 745.233 kb on - strand, within GFF1881at 745.250 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.450 kb on + strandat 745.450 kb on + strandat 745.450 kb on + strandat 745.451 kb on - strandat 745.451 kb on - strandat 745.575 kb on - strand, within GFF1882at 745.575 kb on - strand, within GFF1882at 745.634 kb on + strand, within GFF1882at 745.635 kb on - strand, within GFF1882at 745.692 kb on - strand, within GFF1882at 745.692 kb on - strand, within GFF1882at 745.692 kb on - strand, within GFF1882at 745.692 kb on - strand, within GFF1882at 745.692 kb on - strand, within GFF1882at 745.763 kb on + strand, within GFF1882at 745.763 kb on + strand, within GFF1882at 745.764 kb on - strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.009 kb on + strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.010 kb on - strand, within GFF1882at 746.072 kb on + strand, within GFF1882at 746.072 kb on + strand, within GFF1882at 746.072 kb on + strand, within GFF1882at 746.073 kb on - strand, within GFF1882at 746.129 kb on + strandat 746.130 kb on - strandat 746.141 kb on + strandat 746.142 kb on - strandat 746.142 kb on - strandat 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.268 kb on + strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.269 kb on - strand, within GFF1883at 746.391 kb on + strand, within GFF1883at 746.391 kb on + strand, within GFF1883at 746.391 kb on + strand, within GFF1883at 746.391 kb on + strand, within GFF1883at 746.391 kb on + strand, within GFF1883at 746.392 kb on - strand, within GFF1883at 746.392 kb on - strand, within GFF1883at 746.392 kb on - strand, within GFF1883at 746.392 kb on - strand, within GFF1883at 746.392 kb on - strand, within GFF1883at 746.392 kb on - strand, within GFF1883at 746.618 kb on + strand, within GFF1883at 746.618 kb on + strand, within GFF1883at 746.634 kb on + strand, within GFF1883at 746.635 kb on - strand, within GFF1883at 746.635 kb on - strand, within GFF1883

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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744,593 + -0.7
744,594 - -0.5
744,594 - +1.2
744,653 + +0.3
744,698 + +1.5
744,698 + -0.2
744,698 + -1.0
744,698 + +0.0
744,699 - +0.2
744,699 - +0.1
744,699 - +0.5
744,699 - +0.4
744,699 - +0.1
744,699 - -0.1
744,699 - -0.1
744,749 + GFF1881 0.14 +0.9
744,749 + GFF1881 0.14 +1.1
744,749 + GFF1881 0.14 +0.3
744,749 + GFF1881 0.14 -1.0
744,749 + GFF1881 0.14 -0.2
744,749 + GFF1881 0.14 -0.4
744,750 - GFF1881 0.14 -0.2
744,750 - GFF1881 0.14 -0.4
744,750 - GFF1881 0.14 +0.3
744,750 - GFF1881 0.14 -0.0
744,779 + GFF1881 0.18 -0.6
744,809 + GFF1881 0.22 -0.3
744,809 + GFF1881 0.22 -0.3
744,809 + GFF1881 0.22 +0.1
744,810 - GFF1881 0.22 -0.0
744,810 - GFF1881 0.22 +0.6
744,810 - GFF1881 0.22 -1.0
744,845 + GFF1881 0.26 -1.3
744,846 - GFF1881 0.26 -0.1
744,846 - GFF1881 0.26 -0.4
745,025 + GFF1881 0.49 +1.1
745,026 - GFF1881 0.49 +0.0
745,046 + GFF1881 0.52 +0.1
745,046 + GFF1881 0.52 -1.0
745,047 - GFF1881 0.52 -0.4
745,047 - GFF1881 0.52 -0.1
745,047 - GFF1881 0.52 -0.5
745,091 + GFF1881 0.57 -0.5
745,091 + GFF1881 0.57 -0.2
745,091 + GFF1881 0.57 +0.7
745,092 - GFF1881 0.57 -0.2
745,092 - GFF1881 0.57 -0.4
745,092 - GFF1881 0.57 -1.1
745,092 - GFF1881 0.57 +0.1
745,178 + GFF1881 0.68 +0.6
745,215 - GFF1881 0.73 -0.0
745,215 - GFF1881 0.73 +0.8
745,215 - GFF1881 0.73 -0.6
745,232 + GFF1881 0.75 +0.4
745,232 + GFF1881 0.75 +0.9
745,233 - GFF1881 0.75 +0.2
745,233 - GFF1881 0.75 +0.1
745,250 + GFF1881 0.77 +0.1
745,335 + GFF1881 0.88 -0.3
745,335 + GFF1881 0.88 +0.4
745,335 + GFF1881 0.88 -0.4
745,335 + GFF1881 0.88 +0.1
745,335 + GFF1881 0.88 +0.5
745,335 + GFF1881 0.88 -0.7
745,335 + GFF1881 0.88 -0.4
745,335 + GFF1881 0.88 -0.4
745,336 - GFF1881 0.88 +0.5
745,336 - GFF1881 0.88 +0.2
745,336 - GFF1881 0.88 +0.2
745,336 - GFF1881 0.88 -0.1
745,336 - GFF1881 0.88 +0.3
745,450 + -1.5
745,450 + -4.3
745,450 + -1.8
745,451 - -3.4
745,451 - -1.1
745,575 - GFF1882 0.19 -3.3
745,575 - GFF1882 0.19 -1.8
745,634 + GFF1882 0.27 -2.0
745,635 - GFF1882 0.27 -2.3
745,692 - GFF1882 0.35 -3.3
745,692 - GFF1882 0.35 -2.1
745,692 - GFF1882 0.35 -3.3
745,692 - GFF1882 0.35 -1.8
745,692 - GFF1882 0.35 -3.6
745,763 + GFF1882 0.45 -2.9
745,763 + GFF1882 0.45 -3.3
745,764 - GFF1882 0.45 -3.6
746,009 + GFF1882 0.79 -3.0
746,009 + GFF1882 0.79 -1.5
746,009 + GFF1882 0.79 -0.8
746,009 + GFF1882 0.79 -0.5
746,009 + GFF1882 0.79 -0.8
746,009 + GFF1882 0.79 -3.5
746,009 + GFF1882 0.79 -2.7
746,009 + GFF1882 0.79 -2.1
746,009 + GFF1882 0.79 -1.8
746,010 - GFF1882 0.80 -2.9
746,010 - GFF1882 0.80 -3.0
746,010 - GFF1882 0.80 -3.6
746,010 - GFF1882 0.80 -2.0
746,010 - GFF1882 0.80 -4.4
746,010 - GFF1882 0.80 -2.3
746,010 - GFF1882 0.80 -2.6
746,072 + GFF1882 0.88 -3.2
746,072 + GFF1882 0.88 -2.8
746,072 + GFF1882 0.88 -1.8
746,073 - GFF1882 0.88 -2.6
746,129 + -1.1
746,130 - -2.2
746,141 + +0.2
746,142 - -1.8
746,142 - -1.1
746,268 + GFF1883 0.14 -0.3
746,268 + GFF1883 0.14 +0.2
746,268 + GFF1883 0.14 +0.1
746,268 + GFF1883 0.14 +0.0
746,268 + GFF1883 0.14 +0.1
746,268 + GFF1883 0.14 +0.2
746,268 + GFF1883 0.14 -0.0
746,268 + GFF1883 0.14 +0.2
746,268 + GFF1883 0.14 -1.7
746,268 + GFF1883 0.14 +0.2
746,268 + GFF1883 0.14 +0.2
746,268 + GFF1883 0.14 -0.1
746,268 + GFF1883 0.14 +0.4
746,268 + GFF1883 0.14 +1.1
746,269 - GFF1883 0.15 -0.5
746,269 - GFF1883 0.15 +0.6
746,269 - GFF1883 0.15 -0.1
746,269 - GFF1883 0.15 +0.3
746,269 - GFF1883 0.15 +0.4
746,269 - GFF1883 0.15 +0.5
746,269 - GFF1883 0.15 +1.2
746,269 - GFF1883 0.15 +0.1
746,269 - GFF1883 0.15 +0.5
746,269 - GFF1883 0.15 +0.3
746,269 - GFF1883 0.15 -0.1
746,269 - GFF1883 0.15 +0.0
746,269 - GFF1883 0.15 +0.5
746,269 - GFF1883 0.15 +0.3
746,269 - GFF1883 0.15 +0.1
746,269 - GFF1883 0.15 +1.0
746,269 - GFF1883 0.15 +0.5
746,269 - GFF1883 0.15 -0.1
746,269 - GFF1883 0.15 -0.3
746,391 + GFF1883 0.32 +0.3
746,391 + GFF1883 0.32 -0.4
746,391 + GFF1883 0.32 -0.6
746,391 + GFF1883 0.32 +1.6
746,391 + GFF1883 0.32 +0.1
746,392 - GFF1883 0.33 +0.2
746,392 - GFF1883 0.33 +0.3
746,392 - GFF1883 0.33 +0.8
746,392 - GFF1883 0.33 +0.1
746,392 - GFF1883 0.33 +0.2
746,392 - GFF1883 0.33 +0.4
746,618 + GFF1883 0.66 +0.1
746,618 + GFF1883 0.66 -0.5
746,634 + GFF1883 0.68 -0.1
746,635 - GFF1883 0.68 +1.0
746,635 - GFF1883 0.68 +0.8

Or see this region's nucleotide sequence