Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1869 and GFF1870 overlap by 10 nucleotides GFF1870 and GFF1871 are separated by 2 nucleotides GFF1871 and GFF1872 are separated by 40 nucleotides
GFF1869 - AmpG permease, at 733,842 to 735,257
GFF1869
GFF1870 - Zn-dependent protease with chaperone function, at 735,248 to 736,153
GFF1870
GFF1871 - Hypothetical metal-binding enzyme, YcbL homolog, at 736,156 to 736,794
GFF1871
GFF1872 - Phenylalanyl-tRNA synthetase beta subunit, at 736,835 to 737,320
GFF1872
Position (kb) 735
736
737 Strain fitness (log2 ratio) -1
0
1 at 734.317 kb on + strand, within GFF1869 at 734.332 kb on + strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.570 kb on - strand, within GFF1869 at 734.596 kb on + strand, within GFF1869 at 734.707 kb on + strand, within GFF1869 at 734.707 kb on + strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.986 kb on + strand, within GFF1869 at 734.987 kb on - strand, within GFF1869 at 734.987 kb on - strand, within GFF1869 at 734.987 kb on - strand, within GFF1869 at 735.136 kb on + strand at 735.137 kb on - strand at 735.235 kb on - strand at 735.235 kb on - strand at 735.275 kb on + strand at 735.275 kb on + strand at 735.276 kb on - strand at 735.278 kb on + strand at 735.278 kb on + strand at 735.279 kb on - strand at 735.279 kb on - strand at 735.497 kb on + strand, within GFF1870 at 735.498 kb on - strand, within GFF1870 at 735.498 kb on - strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.708 kb on - strand, within GFF1870 at 736.130 kb on + strand at 736.130 kb on + strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.172 kb on + strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.395 kb on + strand, within GFF1871 at 736.396 kb on - strand, within GFF1871 at 736.784 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.820 kb on - strand at 736.820 kb on - strand at 736.838 kb on + strand at 736.838 kb on + strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.919 kb on + strand, within GFF1872 at 736.919 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.124 kb on - strand, within GFF1872
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 734,317 + GFF1869 0.34 +1.2 734,332 + GFF1869 0.35 -0.4 734,333 - GFF1869 0.35 -0.3 734,333 - GFF1869 0.35 +0.8 734,333 - GFF1869 0.35 +0.7 734,333 - GFF1869 0.35 +0.8 734,570 - GFF1869 0.51 +0.2 734,596 + GFF1869 0.53 +0.8 734,707 + GFF1869 0.61 -0.0 734,707 + GFF1869 0.61 +0.5 734,708 - GFF1869 0.61 -0.3 734,708 - GFF1869 0.61 -1.3 734,708 - GFF1869 0.61 -0.2 734,986 + GFF1869 0.81 +0.6 734,987 - GFF1869 0.81 +0.0 734,987 - GFF1869 0.81 -0.1 734,987 - GFF1869 0.81 +0.9 735,136 + -0.4 735,137 - +0.3 735,235 - -1.1 735,235 - -0.1 735,275 + +0.5 735,275 + -0.5 735,276 - -0.3 735,278 + +0.3 735,278 + +0.4 735,279 - +0.8 735,279 - -1.3 735,497 + GFF1870 0.27 +0.6 735,498 - GFF1870 0.28 -0.2 735,498 - GFF1870 0.28 -0.2 735,707 + GFF1870 0.51 -0.3 735,707 + GFF1870 0.51 +0.4 735,707 + GFF1870 0.51 +0.3 735,708 - GFF1870 0.51 +0.1 736,130 + +0.2 736,130 + -0.2 736,131 - +0.3 736,131 - -0.1 736,131 - -0.5 736,172 + +0.2 736,173 - +0.1 736,173 - +0.7 736,173 - -0.2 736,395 + GFF1871 0.37 -0.1 736,396 - GFF1871 0.38 +1.4 736,784 + +0.3 736,819 + +0.4 736,819 + -0.3 736,819 + -1.5 736,819 + -0.1 736,819 + +0.4 736,820 - +0.0 736,820 - +0.3 736,838 + -0.1 736,838 + +0.2 736,839 - +0.1 736,839 - -0.1 736,839 - +0.0 736,839 - +0.9 736,919 + GFF1872 0.17 +0.1 736,919 + GFF1872 0.17 -0.4 737,114 + GFF1872 0.57 -0.2 737,114 + GFF1872 0.57 -0.3 737,115 - GFF1872 0.58 +0.1 737,115 - GFF1872 0.58 -0.5 737,115 - GFF1872 0.58 -0.7 737,123 + GFF1872 0.59 +0.2 737,123 + GFF1872 0.59 -1.5 737,123 + GFF1872 0.59 -0.0 737,124 - GFF1872 0.59 -0.3
Or see this region's nucleotide sequence