Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1865 and GFF1866 are separated by 298 nucleotides GFF1866 and GFF1867 overlap by 4 nucleotides GFF1867 and GFF1868 are separated by 87 nucleotides
GFF1865 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 727,998 to 729,953
GFF1865
GFF1866 - periplasmic sensor signal transduction histidine kinase, at 730,252 to 731,505
GFF1866
GFF1867 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 731,502 to 732,221
GFF1867
GFF1868 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 732,309 to 733,838
GFF1868
Position (kb) 730
731
732 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 729.480 kb on + strand, within GFF1865 at 729.480 kb on + strand, within GFF1865 at 729.480 kb on + strand, within GFF1865 at 729.480 kb on + strand, within GFF1865 at 729.480 kb on + strand, within GFF1865 at 729.481 kb on - strand, within GFF1865 at 729.481 kb on - strand, within GFF1865 at 729.628 kb on + strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.629 kb on - strand, within GFF1865 at 729.699 kb on + strand, within GFF1865 at 729.699 kb on + strand, within GFF1865 at 729.699 kb on + strand, within GFF1865 at 729.700 kb on - strand, within GFF1865 at 729.700 kb on - strand, within GFF1865 at 729.879 kb on + strand at 729.879 kb on + strand at 729.880 kb on - strand at 729.880 kb on - strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.039 kb on + strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.040 kb on - strand at 730.140 kb on - strand at 730.156 kb on + strand at 730.156 kb on + strand at 730.156 kb on + strand at 730.157 kb on - strand at 730.157 kb on - strand at 731.241 kb on - strand, within GFF1866 at 731.477 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.725 kb on + strand, within GFF1867 at 731.725 kb on + strand, within GFF1867 at 731.726 kb on - strand, within GFF1867 at 731.914 kb on + strand, within GFF1867 at 731.914 kb on + strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 732.160 kb on + strand at 732.160 kb on + strand at 732.160 kb on + strand at 732.160 kb on + strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.234 kb on - strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 729,480 + GFF1865 0.76 -3.2 729,480 + GFF1865 0.76 -2.4 729,480 + GFF1865 0.76 -2.6 729,480 + GFF1865 0.76 -3.8 729,480 + GFF1865 0.76 -0.8 729,481 - GFF1865 0.76 -2.4 729,481 - GFF1865 0.76 -4.4 729,628 + GFF1865 0.83 -2.5 729,629 - GFF1865 0.83 -2.6 729,629 - GFF1865 0.83 -3.1 729,629 - GFF1865 0.83 -4.1 729,629 - GFF1865 0.83 -3.9 729,629 - GFF1865 0.83 -3.7 729,629 - GFF1865 0.83 -0.8 729,629 - GFF1865 0.83 -1.3 729,699 + GFF1865 0.87 -4.8 729,699 + GFF1865 0.87 -4.0 729,699 + GFF1865 0.87 -1.7 729,700 - GFF1865 0.87 -2.3 729,700 - GFF1865 0.87 -4.8 729,879 + +0.0 729,879 + +0.3 729,880 - +0.1 729,880 - -0.0 730,039 + -2.4 730,039 + -0.1 730,039 + -0.0 730,039 + -0.9 730,039 + +0.1 730,039 + +0.3 730,039 + -0.6 730,039 + +0.4 730,039 + -0.5 730,039 + +1.9 730,039 + -0.6 730,039 + +0.0 730,039 + -0.1 730,039 + -0.1 730,039 + -0.8 730,040 - -0.2 730,040 - +0.6 730,040 - -0.3 730,040 - -0.2 730,040 - -0.0 730,040 - -0.7 730,040 - -0.4 730,040 - +0.1 730,040 - +0.2 730,040 - -0.8 730,040 - -0.7 730,040 - -0.0 730,040 - +0.3 730,140 - -0.1 730,156 + -0.1 730,156 + -0.8 730,156 + +0.6 730,157 - +0.2 730,157 - +0.1 731,241 - GFF1866 0.79 -1.5 731,477 + -0.4 731,527 + +0.2 731,527 + -0.3 731,527 + -0.1 731,527 + -0.4 731,527 + +0.1 731,527 + +0.8 731,527 + +1.1 731,725 + GFF1867 0.31 +0.3 731,725 + GFF1867 0.31 +0.9 731,726 - GFF1867 0.31 -0.3 731,914 + GFF1867 0.57 +0.5 731,914 + GFF1867 0.57 +0.8 731,915 - GFF1867 0.57 -0.2 731,915 - GFF1867 0.57 +0.4 731,915 - GFF1867 0.57 -0.2 732,160 + +0.1 732,160 + +0.2 732,160 + +0.5 732,160 + +0.2 732,161 - +2.7 732,161 - -0.1 732,161 - -0.2 732,161 - -0.5 732,161 - +0.3 732,161 - -0.6 732,161 - +0.2 732,234 - +0.6 732,296 + -0.3 732,296 + +0.7 732,296 + +0.5 732,296 + -0.1 732,297 - +0.3 732,297 - -0.1 732,297 - +0.1 732,297 - +0.9 732,297 - -0.3 732,306 + -0.2 732,306 + -0.1 732,306 + -0.6 732,306 + +0.8 732,306 + -0.3 732,306 + +0.3 732,307 - -0.0 732,307 - -0.3 732,307 - +0.6 732,307 - +0.4
Or see this region's nucleotide sequence