Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1763 and GFF1764 are separated by 2 nucleotides GFF1764 and GFF1765 are separated by 36 nucleotides GFF1765 and GFF1766 are separated by 76 nucleotides
GFF1763 - Phosphoglycerate mutase family protein, at 627,185 to 627,868
GFF1763
GFF1764 - Creatinine amidohydrolase (EC 3.5.2.10), at 627,871 to 628,713
GFF1764
GFF1765 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 628,750 to 629,496
GFF1765
GFF1766 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 629,573 to 630,793
GFF1766
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.809 kb on + strand at 627.809 kb on + strand at 627.809 kb on + strand at 627.810 kb on - strand at 627.810 kb on - strand at 627.810 kb on - strand at 627.810 kb on - strand at 627.860 kb on + strand at 627.860 kb on + strand at 627.860 kb on + strand at 627.860 kb on + strand at 627.861 kb on - strand at 627.861 kb on - strand at 627.861 kb on - strand at 627.872 kb on + strand at 627.873 kb on - strand at 627.873 kb on - strand at 628.034 kb on + strand, within GFF1764 at 628.034 kb on + strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.289 kb on + strand, within GFF1764 at 628.289 kb on + strand, within GFF1764 at 628.290 kb on - strand, within GFF1764 at 628.487 kb on + strand, within GFF1764 at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.738 kb on + strand at 628.739 kb on - strand at 628.780 kb on + strand at 628.780 kb on + strand at 628.780 kb on + strand at 628.781 kb on - strand at 628.781 kb on - strand at 628.805 kb on + strand at 628.806 kb on - strand at 628.852 kb on + strand, within GFF1765 at 629.152 kb on + strand, within GFF1765 at 629.580 kb on + strand at 629.581 kb on - strand at 629.581 kb on - strand at 629.581 kb on - strand at 629.581 kb on - strand at 629.646 kb on + strand at 629.646 kb on + strand at 629.646 kb on + strand at 629.646 kb on + strand at 629.647 kb on - strand at 629.647 kb on - strand at 629.647 kb on - strand at 629.694 kb on + strand at 629.694 kb on + strand at 629.694 kb on + strand at 629.695 kb on - strand, within GFF1766 at 629.793 kb on + strand, within GFF1766 at 629.793 kb on + strand, within GFF1766 at 629.793 kb on + strand, within GFF1766 at 629.794 kb on - strand, within GFF1766 at 629.794 kb on - strand, within GFF1766 at 629.794 kb on - strand, within GFF1766 at 629.794 kb on - strand, within GFF1766 at 629.794 kb on - strand, within GFF1766 at 629.794 kb on - strand, within GFF1766 at 629.895 kb on + strand, within GFF1766 at 629.895 kb on + strand, within GFF1766 at 629.896 kb on - strand, within GFF1766 at 629.896 kb on - strand, within GFF1766 at 629.896 kb on - strand, within GFF1766 at 630.015 kb on + strand, within GFF1766 at 630.099 kb on + strand, within GFF1766 at 630.099 kb on + strand, within GFF1766 at 630.100 kb on - strand, within GFF1766 at 630.370 kb on - strand, within GFF1766 at 630.370 kb on - strand, within GFF1766 at 630.370 kb on - strand, within GFF1766 at 630.370 kb on - strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.399 kb on + strand, within GFF1766 at 630.400 kb on - strand, within GFF1766 at 630.400 kb on - strand, within GFF1766 at 630.420 kb on + strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.421 kb on - strand, within GFF1766 at 630.427 kb on - strand, within GFF1766 at 630.427 kb on - strand, within GFF1766 at 630.427 kb on - strand, within GFF1766
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 627,809 + -0.1 627,809 + +0.4 627,809 + -1.3 627,810 - -0.1 627,810 - -0.1 627,810 - +0.3 627,810 - +0.2 627,860 + +0.7 627,860 + +0.2 627,860 + +0.5 627,860 + +0.1 627,861 - +1.2 627,861 - +0.2 627,861 - -0.1 627,872 + +0.3 627,873 - +0.2 627,873 - +0.2 628,034 + GFF1764 0.19 -2.0 628,034 + GFF1764 0.19 -1.9 628,035 - GFF1764 0.19 -3.3 628,035 - GFF1764 0.19 +0.0 628,035 - GFF1764 0.19 -2.6 628,035 - GFF1764 0.19 -1.9 628,289 + GFF1764 0.50 -2.5 628,289 + GFF1764 0.50 -2.1 628,290 - GFF1764 0.50 -2.1 628,487 + GFF1764 0.73 -1.4 628,724 + -0.6 628,724 + +0.5 628,724 + -0.4 628,724 + -0.0 628,724 + -0.1 628,724 + +0.6 628,725 - -0.7 628,725 - -0.6 628,725 - -0.5 628,725 - +0.1 628,725 - +0.6 628,725 - +0.5 628,725 - +0.5 628,725 - -0.5 628,738 + +0.7 628,739 - -0.1 628,780 + +0.3 628,780 + +0.6 628,780 + +0.6 628,781 - +0.6 628,781 - +0.1 628,805 + +1.5 628,806 - +0.0 628,852 + GFF1765 0.14 +0.2 629,152 + GFF1765 0.54 +0.5 629,580 + -0.6 629,581 - -0.3 629,581 - -1.2 629,581 - +0.1 629,581 - -0.3 629,646 + +0.3 629,646 + -0.2 629,646 + -0.5 629,646 + +0.1 629,647 - -0.8 629,647 - +0.5 629,647 - -0.7 629,694 + -0.7 629,694 + -0.2 629,694 + -0.3 629,695 - GFF1766 0.10 +2.5 629,793 + GFF1766 0.18 -0.4 629,793 + GFF1766 0.18 -0.5 629,793 + GFF1766 0.18 +0.2 629,794 - GFF1766 0.18 -0.0 629,794 - GFF1766 0.18 -0.9 629,794 - GFF1766 0.18 -0.5 629,794 - GFF1766 0.18 -0.3 629,794 - GFF1766 0.18 +0.1 629,794 - GFF1766 0.18 +0.4 629,895 + GFF1766 0.26 -0.0 629,895 + GFF1766 0.26 -0.7 629,896 - GFF1766 0.26 +0.7 629,896 - GFF1766 0.26 -0.5 629,896 - GFF1766 0.26 -0.7 630,015 + GFF1766 0.36 +0.1 630,099 + GFF1766 0.43 -0.4 630,099 + GFF1766 0.43 -0.4 630,100 - GFF1766 0.43 +0.8 630,370 - GFF1766 0.65 -0.1 630,370 - GFF1766 0.65 +0.3 630,370 - GFF1766 0.65 -0.1 630,370 - GFF1766 0.65 -0.4 630,399 + GFF1766 0.68 -1.6 630,399 + GFF1766 0.68 -0.2 630,399 + GFF1766 0.68 +0.2 630,399 + GFF1766 0.68 +0.2 630,399 + GFF1766 0.68 -0.6 630,399 + GFF1766 0.68 +0.4 630,399 + GFF1766 0.68 -0.1 630,399 + GFF1766 0.68 -0.6 630,399 + GFF1766 0.68 +0.9 630,400 - GFF1766 0.68 -0.6 630,400 - GFF1766 0.68 -0.0 630,420 + GFF1766 0.69 -0.2 630,421 - GFF1766 0.69 +0.4 630,421 - GFF1766 0.69 -1.9 630,421 - GFF1766 0.69 +0.8 630,421 - GFF1766 0.69 +0.0 630,421 - GFF1766 0.69 -2.6 630,421 - GFF1766 0.69 -0.2 630,421 - GFF1766 0.69 +0.2 630,421 - GFF1766 0.69 -0.2 630,427 - GFF1766 0.70 +0.1 630,427 - GFF1766 0.70 -0.1 630,427 - GFF1766 0.70 +0.2
Or see this region's nucleotide sequence