Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1663

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1662 and GFF1663 are separated by 14 nucleotidesGFF1663 and GFF1664 are separated by 21 nucleotides GFF1662 - low-specificity D-threonine aldolase, at 515,569 to 516,753 GFF1662 GFF1663 - Sporulation domain protein, at 516,768 to 517,829 GFF1663 GFF1664 - Sterol desaturase-related protein, at 517,851 to 519,716 GFF1664 Position (kb) 516 517 518Strain fitness (log2 ratio) -1 0 1at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.869 kb on + strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 515.870 kb on - strand, within GFF1662at 516.157 kb on + strand, within GFF1662at 516.157 kb on + strand, within GFF1662at 516.157 kb on + strand, within GFF1662at 516.158 kb on - strand, within GFF1662at 516.158 kb on - strand, within GFF1662at 516.158 kb on - strand, within GFF1662at 516.355 kb on + strand, within GFF1662at 516.355 kb on + strand, within GFF1662at 516.355 kb on + strand, within GFF1662at 516.355 kb on + strand, within GFF1662at 516.355 kb on + strand, within GFF1662at 516.356 kb on - strand, within GFF1662at 516.356 kb on - strand, within GFF1662at 516.356 kb on - strand, within GFF1662at 517.481 kb on - strand, within GFF1663at 517.612 kb on + strand, within GFF1663at 517.613 kb on - strand, within GFF1663at 517.613 kb on - strand, within GFF1663at 517.735 kb on + strandat 517.736 kb on - strandat 517.995 kb on + strandat 518.028 kb on + strandat 518.118 kb on + strand, within GFF1664at 518.118 kb on + strand, within GFF1664at 518.119 kb on - strand, within GFF1664at 518.119 kb on - strand, within GFF1664at 518.119 kb on - strand, within GFF1664at 518.131 kb on - strand, within GFF1664at 518.206 kb on - strand, within GFF1664at 518.217 kb on + strand, within GFF1664at 518.217 kb on + strand, within GFF1664at 518.217 kb on + strand, within GFF1664at 518.218 kb on - strand, within GFF1664at 518.218 kb on - strand, within GFF1664at 518.221 kb on - strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.295 kb on + strand, within GFF1664at 518.296 kb on - strand, within GFF1664at 518.296 kb on - strand, within GFF1664at 518.296 kb on - strand, within GFF1664at 518.296 kb on - strand, within GFF1664at 518.296 kb on - strand, within GFF1664at 518.296 kb on - strand, within GFF1664at 518.355 kb on + strand, within GFF1664at 518.355 kb on + strand, within GFF1664at 518.424 kb on + strand, within GFF1664at 518.529 kb on + strand, within GFF1664at 518.545 kb on - strand, within GFF1664at 518.545 kb on - strand, within GFF1664at 518.545 kb on - strand, within GFF1664at 518.613 kb on + strand, within GFF1664at 518.613 kb on + strand, within GFF1664at 518.613 kb on + strand, within GFF1664at 518.671 kb on - strand, within GFF1664at 518.671 kb on - strand, within GFF1664at 518.814 kb on + strand, within GFF1664at 518.814 kb on + strand, within GFF1664

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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515,869 + GFF1662 0.25 +0.4
515,869 + GFF1662 0.25 -0.2
515,869 + GFF1662 0.25 -0.9
515,869 + GFF1662 0.25 +1.1
515,869 + GFF1662 0.25 +0.8
515,869 + GFF1662 0.25 -0.1
515,869 + GFF1662 0.25 +0.5
515,869 + GFF1662 0.25 +1.0
515,869 + GFF1662 0.25 +0.7
515,869 + GFF1662 0.25 -0.5
515,869 + GFF1662 0.25 +0.1
515,869 + GFF1662 0.25 +0.3
515,869 + GFF1662 0.25 -0.2
515,870 - GFF1662 0.25 -0.7
515,870 - GFF1662 0.25 +0.4
515,870 - GFF1662 0.25 -0.0
515,870 - GFF1662 0.25 -0.1
515,870 - GFF1662 0.25 -0.4
515,870 - GFF1662 0.25 -0.1
515,870 - GFF1662 0.25 +1.3
515,870 - GFF1662 0.25 +0.5
516,157 + GFF1662 0.50 +0.0
516,157 + GFF1662 0.50 +0.4
516,157 + GFF1662 0.50 -0.1
516,158 - GFF1662 0.50 +0.8
516,158 - GFF1662 0.50 +1.0
516,158 - GFF1662 0.50 +0.7
516,355 + GFF1662 0.66 +0.7
516,355 + GFF1662 0.66 +0.0
516,355 + GFF1662 0.66 -0.1
516,355 + GFF1662 0.66 +0.3
516,355 + GFF1662 0.66 -0.2
516,356 - GFF1662 0.66 +1.4
516,356 - GFF1662 0.66 -0.3
516,356 - GFF1662 0.66 -0.2
517,481 - GFF1663 0.67 +0.5
517,612 + GFF1663 0.79 +1.1
517,613 - GFF1663 0.80 -0.1
517,613 - GFF1663 0.80 +0.0
517,735 + +0.2
517,736 - -0.3
517,995 + +0.3
518,028 + -0.4
518,118 + GFF1664 0.14 -0.7
518,118 + GFF1664 0.14 -0.7
518,119 - GFF1664 0.14 -0.3
518,119 - GFF1664 0.14 +1.0
518,119 - GFF1664 0.14 -0.2
518,131 - GFF1664 0.15 +0.2
518,206 - GFF1664 0.19 -0.9
518,217 + GFF1664 0.20 +0.4
518,217 + GFF1664 0.20 -0.1
518,217 + GFF1664 0.20 -0.4
518,218 - GFF1664 0.20 +0.0
518,218 - GFF1664 0.20 -0.3
518,221 - GFF1664 0.20 +0.4
518,295 + GFF1664 0.24 +1.4
518,295 + GFF1664 0.24 +0.6
518,295 + GFF1664 0.24 +0.2
518,295 + GFF1664 0.24 -0.3
518,295 + GFF1664 0.24 -0.5
518,295 + GFF1664 0.24 -0.3
518,295 + GFF1664 0.24 -1.6
518,296 - GFF1664 0.24 +0.9
518,296 - GFF1664 0.24 +1.1
518,296 - GFF1664 0.24 +0.3
518,296 - GFF1664 0.24 -0.4
518,296 - GFF1664 0.24 -0.3
518,296 - GFF1664 0.24 -1.4
518,355 + GFF1664 0.27 -0.5
518,355 + GFF1664 0.27 -0.1
518,424 + GFF1664 0.31 +0.3
518,529 + GFF1664 0.36 -0.3
518,545 - GFF1664 0.37 -1.2
518,545 - GFF1664 0.37 +1.7
518,545 - GFF1664 0.37 +0.6
518,613 + GFF1664 0.41 +0.8
518,613 + GFF1664 0.41 -0.0
518,613 + GFF1664 0.41 -0.1
518,671 - GFF1664 0.44 +0.8
518,671 - GFF1664 0.44 -0.4
518,814 + GFF1664 0.52 +0.0
518,814 + GFF1664 0.52 -0.8

Or see this region's nucleotide sequence