Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1629 and GFF1630 are separated by 16 nucleotides GFF1630 and GFF1631 are separated by 17 nucleotides GFF1631 and GFF1632 are separated by 31 nucleotides
GFF1629 - COG1565: Uncharacterized conserved protein, at 483,211 to 484,338
GFF1629
GFF1630 - FolM Alternative dihydrofolate reductase 1, at 484,355 to 485,143
GFF1630
GFF1631 - Dihydroneopterin aldolase (EC 4.1.2.25), at 485,161 to 485,535
GFF1631
GFF1632 - hypothetical protein, at 485,567 to 486,364
GFF1632
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1 at 483.969 kb on - strand, within GFF1629 at 484.303 kb on + strand at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.848 kb on - strand, within GFF1630 at 486.024 kb on + strand, within GFF1632 at 486.024 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.061 kb on - strand, within GFF1632 at 486.061 kb on - strand, within GFF1632 at 486.061 kb on - strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.082 kb on - strand, within GFF1632
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 483,969 - GFF1629 0.67 -2.7 484,303 + -0.1 484,847 + GFF1630 0.62 -0.4 484,847 + GFF1630 0.62 -1.4 484,847 + GFF1630 0.62 -1.7 484,847 + GFF1630 0.62 -1.0 484,847 + GFF1630 0.62 -2.5 484,847 + GFF1630 0.62 -0.8 484,848 - GFF1630 0.62 -0.4 486,024 + GFF1632 0.57 +0.6 486,024 + GFF1632 0.57 +0.4 486,060 + GFF1632 0.62 +1.1 486,060 + GFF1632 0.62 +0.6 486,060 + GFF1632 0.62 +0.3 486,060 + GFF1632 0.62 -0.1 486,060 + GFF1632 0.62 +0.7 486,061 - GFF1632 0.62 +0.1 486,061 - GFF1632 0.62 +0.2 486,061 - GFF1632 0.62 +0.0 486,081 + GFF1632 0.64 +0.3 486,081 + GFF1632 0.64 -0.7 486,081 + GFF1632 0.64 -1.0 486,081 + GFF1632 0.64 -1.1 486,081 + GFF1632 0.64 +0.3 486,082 - GFF1632 0.65 +0.1
Or see this region's nucleotide sequence