Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1579 and GFF1580 are separated by 46 nucleotides GFF1580 and GFF1581 overlap by 8 nucleotides GFF1581 and GFF1582 are separated by 135 nucleotides
GFF1579 - Tricarboxylate transport protein TctC, at 433,814 to 434,905
GFF1579
GFF1580 - Transcriptional regulator, LysR family, at 434,952 to 435,854
GFF1580
GFF1581 - hypothetical protein, at 435,847 to 437,343
GFF1581
GFF1582 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 437,479 to 439,131
GFF1582
Position (kb) 435
436
437
438 Strain fitness (log2 ratio) -1
0
1 at 434.943 kb on - strand at 435.462 kb on + strand, within GFF1580 at 435.920 kb on + strand at 435.920 kb on + strand at 435.920 kb on + strand at 435.920 kb on + strand at 435.921 kb on - strand at 435.921 kb on - strand at 435.975 kb on - strand at 436.496 kb on + strand, within GFF1581 at 436.717 kb on + strand, within GFF1581 at 436.718 kb on + strand, within GFF1581 at 436.719 kb on - strand, within GFF1581 at 436.719 kb on - strand, within GFF1581 at 436.748 kb on + strand, within GFF1581 at 436.749 kb on - strand, within GFF1581 at 436.749 kb on - strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.929 kb on - strand, within GFF1581 at 436.929 kb on - strand, within GFF1581 at 436.986 kb on - strand, within GFF1581 at 437.455 kb on + strand at 437.455 kb on + strand at 437.456 kb on - strand at 437.500 kb on + strand at 437.501 kb on - strand at 437.593 kb on + strand at 437.620 kb on + strand at 437.956 kb on + strand, within GFF1582 at 437.957 kb on - strand, within GFF1582 at 438.004 kb on + strand, within GFF1582 at 438.004 kb on + strand, within GFF1582
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 434,943 - -0.6 435,462 + GFF1580 0.56 +0.6 435,920 + +0.6 435,920 + -0.2 435,920 + -0.9 435,920 + +0.4 435,921 - -1.1 435,921 - -0.3 435,975 - -0.4 436,496 + GFF1581 0.43 +0.1 436,717 + GFF1581 0.58 -0.3 436,718 + GFF1581 0.58 +0.6 436,719 - GFF1581 0.58 +0.1 436,719 - GFF1581 0.58 +0.3 436,748 + GFF1581 0.60 -0.2 436,749 - GFF1581 0.60 -0.1 436,749 - GFF1581 0.60 -0.3 436,928 + GFF1581 0.72 +0.2 436,928 + GFF1581 0.72 +0.2 436,928 + GFF1581 0.72 +0.9 436,929 - GFF1581 0.72 -0.3 436,929 - GFF1581 0.72 -0.2 436,986 - GFF1581 0.76 +0.2 437,455 + +0.6 437,455 + -0.4 437,456 - +0.9 437,500 + -0.0 437,501 - +1.0 437,593 + -0.2 437,620 + +0.6 437,956 + GFF1582 0.29 +0.5 437,957 - GFF1582 0.29 -0.4 438,004 + GFF1582 0.32 -0.1 438,004 + GFF1582 0.32 +1.2
Or see this region's nucleotide sequence