Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1573 and GFF1574 are separated by 26 nucleotides GFF1574 and GFF1575 are separated by 142 nucleotides GFF1575 and GFF1576 are separated by 12 nucleotides
GFF1573 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 428,867 to 430,054
GFF1573
GFF1574 - Nicotinamidase (EC 3.5.1.19), at 430,081 to 430,896
GFF1574
GFF1575 - Nudix-related transcriptional regulator NrtR, at 431,039 to 431,689
GFF1575
GFF1576 - Glutaminase (EC 3.5.1.2), at 431,702 to 432,613
GFF1576
Position (kb) 430
431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 429.237 kb on + strand, within GFF1573 at 429.237 kb on + strand, within GFF1573 at 429.237 kb on + strand, within GFF1573 at 429.246 kb on - strand, within GFF1573 at 429.310 kb on - strand, within GFF1573 at 429.388 kb on - strand, within GFF1573 at 429.423 kb on + strand, within GFF1573 at 429.658 kb on - strand, within GFF1573 at 429.766 kb on - strand, within GFF1573 at 429.766 kb on - strand, within GFF1573 at 429.819 kb on + strand, within GFF1573 at 429.819 kb on + strand, within GFF1573 at 429.837 kb on + strand, within GFF1573 at 429.837 kb on + strand, within GFF1573 at 429.838 kb on - strand, within GFF1573 at 430.008 kb on + strand at 430.009 kb on - strand at 430.009 kb on - strand at 430.263 kb on - strand, within GFF1574 at 430.421 kb on + strand, within GFF1574 at 430.421 kb on + strand, within GFF1574 at 430.936 kb on + strand at 430.937 kb on - strand at 430.937 kb on - strand at 430.938 kb on + strand at 430.938 kb on + strand at 430.939 kb on - strand at 430.939 kb on - strand at 431.159 kb on + strand, within GFF1575 at 431.252 kb on + strand, within GFF1575 at 431.312 kb on + strand, within GFF1575 at 431.508 kb on - strand, within GFF1575 at 431.780 kb on + strand at 431.780 kb on + strand at 431.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 429,237 + GFF1573 0.31 -0.4 429,237 + GFF1573 0.31 +0.1 429,237 + GFF1573 0.31 +0.1 429,246 - GFF1573 0.32 +0.1 429,310 - GFF1573 0.37 -0.4 429,388 - GFF1573 0.44 -0.5 429,423 + GFF1573 0.47 -0.2 429,658 - GFF1573 0.67 -0.4 429,766 - GFF1573 0.76 +1.7 429,766 - GFF1573 0.76 +0.0 429,819 + GFF1573 0.80 +0.5 429,819 + GFF1573 0.80 -0.1 429,837 + GFF1573 0.82 +0.7 429,837 + GFF1573 0.82 +0.7 429,838 - GFF1573 0.82 -0.3 430,008 + +0.2 430,009 - -0.4 430,009 - +0.4 430,263 - GFF1574 0.22 -0.1 430,421 + GFF1574 0.42 +1.8 430,421 + GFF1574 0.42 -0.1 430,936 + +0.0 430,937 - +0.5 430,937 - -0.8 430,938 + -1.7 430,938 + -1.0 430,939 - -1.1 430,939 - -1.3 431,159 + GFF1575 0.18 -1.9 431,252 + GFF1575 0.33 -1.2 431,312 + GFF1575 0.42 -0.4 431,508 - GFF1575 0.72 -1.2 431,780 + -0.2 431,780 + +0.7 431,781 - +1.1
Or see this region's nucleotide sequence