Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1541 and GFF1542 are separated by 1 nucleotides GFF1542 and GFF1543 overlap by 4 nucleotides GFF1543 and GFF1544 are separated by 148 nucleotides
GFF1541 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 395,891 to 396,658
GFF1541
GFF1542 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 396,660 to 397,466
GFF1542
GFF1543 - Beta-lactamase-like, at 397,463 to 398,365
GFF1543
GFF1544 - Transcriptional regulatory protein, at 398,514 to 399,554
GFF1544
Position (kb) 397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 396.706 kb on + strand at 396.839 kb on - strand, within GFF1542 at 396.839 kb on - strand, within GFF1542 at 397.190 kb on - strand, within GFF1542 at 397.932 kb on + strand, within GFF1543 at 398.025 kb on + strand, within GFF1543 at 398.026 kb on - strand, within GFF1543 at 398.026 kb on - strand, within GFF1543 at 398.073 kb on + strand, within GFF1543 at 398.283 kb on + strand at 398.283 kb on + strand at 398.283 kb on + strand at 398.316 kb on + strand at 398.442 kb on + strand at 398.442 kb on + strand at 398.443 kb on - strand at 398.443 kb on - strand at 398.667 kb on + strand, within GFF1544 at 398.667 kb on + strand, within GFF1544 at 398.667 kb on + strand, within GFF1544 at 398.667 kb on + strand, within GFF1544 at 398.667 kb on + strand, within GFF1544 at 398.668 kb on - strand, within GFF1544 at 398.668 kb on - strand, within GFF1544 at 398.668 kb on - strand, within GFF1544 at 398.668 kb on - strand, within GFF1544 at 398.802 kb on + strand, within GFF1544 at 398.802 kb on + strand, within GFF1544 at 399.159 kb on + strand, within GFF1544 at 399.160 kb on - strand, within GFF1544
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 396,706 + -0.7 396,839 - GFF1542 0.22 -0.7 396,839 - GFF1542 0.22 -0.4 397,190 - GFF1542 0.66 +0.1 397,932 + GFF1543 0.52 +0.6 398,025 + GFF1543 0.62 +0.4 398,026 - GFF1543 0.62 -1.2 398,026 - GFF1543 0.62 +0.9 398,073 + GFF1543 0.68 -1.2 398,283 + -0.8 398,283 + -0.3 398,283 + -0.4 398,316 + +0.8 398,442 + +0.5 398,442 + +0.1 398,443 - +0.4 398,443 - +0.0 398,667 + GFF1544 0.15 -1.1 398,667 + GFF1544 0.15 -0.7 398,667 + GFF1544 0.15 -1.2 398,667 + GFF1544 0.15 -3.1 398,667 + GFF1544 0.15 -0.8 398,668 - GFF1544 0.15 -0.1 398,668 - GFF1544 0.15 -2.0 398,668 - GFF1544 0.15 -0.6 398,668 - GFF1544 0.15 -1.7 398,802 + GFF1544 0.28 -1.7 398,802 + GFF1544 0.28 -1.2 399,159 + GFF1544 0.62 -0.2 399,160 - GFF1544 0.62 -0.9
Or see this region's nucleotide sequence