Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1507 and GFF1508 are separated by 10 nucleotides GFF1508 and GFF1509 are separated by 191 nucleotides GFF1509 and GFF1510 are separated by 26 nucleotides GFF1510 and GFF1511 are separated by 3 nucleotides
GFF1507 - Esterase/lipase, at 357,262 to 358,188
GFF1507
GFF1508 - sensory box histidine kinase, at 358,199 to 359,617
GFF1508
GFF1509 - ATP synthase F0 sector subunit c, at 359,809 to 360,048
GFF1509
GFF1510 - Oxidoreductase (EC 1.1.1.-), at 360,075 to 360,596
GFF1510
GFF1511 - Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-), at 360,600 to 361,637
GFF1511
Position (kb) 358
359
360 Strain fitness (log2 ratio) -1
0
1 at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.233 kb on - strand at 357.233 kb on - strand at 357.363 kb on + strand, within GFF1507 at 357.463 kb on + strand, within GFF1507 at 357.464 kb on - strand, within GFF1507 at 357.464 kb on - strand, within GFF1507 at 357.500 kb on - strand, within GFF1507 at 357.818 kb on - strand, within GFF1507 at 357.853 kb on + strand, within GFF1507 at 357.853 kb on + strand, within GFF1507 at 357.916 kb on + strand, within GFF1507 at 357.916 kb on + strand, within GFF1507 at 357.916 kb on + strand, within GFF1507 at 357.917 kb on - strand, within GFF1507 at 358.045 kb on + strand, within GFF1507 at 358.802 kb on - strand, within GFF1508 at 359.034 kb on + strand, within GFF1508 at 359.034 kb on + strand, within GFF1508 at 359.035 kb on - strand, within GFF1508 at 359.207 kb on - strand, within GFF1508 at 359.505 kb on + strand at 359.505 kb on + strand at 359.505 kb on + strand at 359.505 kb on + strand at 359.505 kb on + strand at 359.506 kb on - strand at 359.506 kb on - strand at 359.506 kb on - strand at 359.506 kb on - strand at 359.689 kb on + strand at 359.689 kb on + strand at 359.689 kb on + strand at 359.690 kb on - strand at 359.690 kb on - strand at 359.690 kb on - strand at 359.690 kb on - strand at 359.690 kb on - strand at 360.303 kb on + strand, within GFF1510 at 360.304 kb on - strand, within GFF1510 at 360.304 kb on - strand, within GFF1510 at 360.304 kb on - strand, within GFF1510 at 360.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 357,232 + +0.5 357,232 + -0.0 357,232 + -0.2 357,232 + +0.0 357,232 + +1.2 357,233 - -0.2 357,233 - +0.3 357,363 + GFF1507 0.11 -0.1 357,463 + GFF1507 0.22 +1.4 357,464 - GFF1507 0.22 -0.1 357,464 - GFF1507 0.22 -0.2 357,500 - GFF1507 0.26 -0.2 357,818 - GFF1507 0.60 -0.1 357,853 + GFF1507 0.64 -0.0 357,853 + GFF1507 0.64 +0.6 357,916 + GFF1507 0.71 -0.4 357,916 + GFF1507 0.71 -0.4 357,916 + GFF1507 0.71 -0.2 357,917 - GFF1507 0.71 +0.2 358,045 + GFF1507 0.84 +0.5 358,802 - GFF1508 0.42 +0.1 359,034 + GFF1508 0.59 +0.3 359,034 + GFF1508 0.59 -0.0 359,035 - GFF1508 0.59 -1.6 359,207 - GFF1508 0.71 -1.2 359,505 + +0.1 359,505 + -0.8 359,505 + -0.2 359,505 + +0.4 359,505 + -0.1 359,506 - +0.2 359,506 - +0.8 359,506 - -0.4 359,506 - -0.2 359,689 + +0.3 359,689 + -0.1 359,689 + +0.1 359,690 - +0.3 359,690 - +0.5 359,690 - -1.1 359,690 - -0.0 359,690 - +0.4 360,303 + GFF1510 0.44 +0.6 360,304 - GFF1510 0.44 +0.1 360,304 - GFF1510 0.44 -0.2 360,304 - GFF1510 0.44 +0.1 360,574 - +0.5
Or see this region's nucleotide sequence