Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1391 and GFF1392 are separated by 4 nucleotides GFF1392 and GFF1393 are separated by 2 nucleotides GFF1393 and GFF1394 are separated by 87 nucleotides
GFF1391 - General secretion pathway protein E, at 246,115 to 247,557
GFF1391
GFF1392 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 247,562 to 248,791
GFF1392
GFF1393 - 5'-nucleotidase (EC 3.1.3.5), at 248,794 to 249,693
GFF1393
GFF1394 - ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27), at 249,781 to 251,574
GFF1394
Position (kb) 247
248
249 Strain fitness (log2 ratio) -1
0
1
2 at 247.357 kb on + strand, within GFF1391 at 247.357 kb on + strand, within GFF1391 at 247.358 kb on - strand, within GFF1391 at 247.378 kb on + strand, within GFF1391 at 247.378 kb on + strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.448 kb on - strand at 247.448 kb on - strand at 247.571 kb on + strand at 247.572 kb on - strand at 247.572 kb on - strand at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.971 kb on - strand, within GFF1392 at 247.971 kb on - strand, within GFF1392 at 248.091 kb on - strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.378 kb on + strand, within GFF1392 at 248.379 kb on - strand, within GFF1392 at 248.899 kb on + strand, within GFF1393 at 248.899 kb on + strand, within GFF1393 at 248.899 kb on + strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 249.073 kb on + strand, within GFF1393 at 249.074 kb on - strand, within GFF1393 at 249.074 kb on - strand, within GFF1393 at 249.127 kb on + strand, within GFF1393 at 249.220 kb on + strand, within GFF1393 at 249.220 kb on + strand, within GFF1393 at 249.221 kb on - strand, within GFF1393 at 249.221 kb on - strand, within GFF1393 at 249.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 247,357 + GFF1391 0.86 +0.2 247,357 + GFF1391 0.86 +0.5 247,358 - GFF1391 0.86 +0.1 247,378 + GFF1391 0.88 +0.2 247,378 + GFF1391 0.88 +0.2 247,379 - GFF1391 0.88 +0.1 247,379 - GFF1391 0.88 -0.3 247,379 - GFF1391 0.88 -0.2 247,379 - GFF1391 0.88 +0.4 247,448 - +0.2 247,448 - +0.3 247,571 + -0.9 247,572 - +0.1 247,572 - -0.0 247,970 + GFF1392 0.33 -1.1 247,970 + GFF1392 0.33 -0.1 247,970 + GFF1392 0.33 -1.0 247,970 + GFF1392 0.33 +1.9 247,970 + GFF1392 0.33 -0.8 247,971 - GFF1392 0.33 +0.4 247,971 - GFF1392 0.33 +0.1 248,091 - GFF1392 0.43 -1.6 248,144 + GFF1392 0.47 -0.2 248,144 + GFF1392 0.47 -0.0 248,144 + GFF1392 0.47 -1.5 248,144 + GFF1392 0.47 -0.1 248,144 + GFF1392 0.47 -1.2 248,145 - GFF1392 0.47 +0.6 248,145 - GFF1392 0.47 +0.3 248,145 - GFF1392 0.47 +0.7 248,244 - GFF1392 0.55 +0.7 248,244 - GFF1392 0.55 -0.1 248,244 - GFF1392 0.55 +0.4 248,244 - GFF1392 0.55 -1.3 248,378 + GFF1392 0.66 -0.1 248,379 - GFF1392 0.66 -0.7 248,899 + GFF1393 0.12 +0.7 248,899 + GFF1393 0.12 +1.3 248,899 + GFF1393 0.12 +0.3 248,900 - GFF1393 0.12 -0.3 248,900 - GFF1393 0.12 -0.2 248,900 - GFF1393 0.12 -0.2 248,900 - GFF1393 0.12 -1.3 248,900 - GFF1393 0.12 -0.1 248,900 - GFF1393 0.12 -0.3 248,900 - GFF1393 0.12 +0.2 249,073 + GFF1393 0.31 -0.0 249,074 - GFF1393 0.31 -1.5 249,074 - GFF1393 0.31 +1.4 249,127 + GFF1393 0.37 -0.6 249,220 + GFF1393 0.47 -0.0 249,220 + GFF1393 0.47 -0.2 249,221 - GFF1393 0.47 +0.1 249,221 - GFF1393 0.47 -0.4 249,692 - -0.4
Or see this region's nucleotide sequence