Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1266 and GFF1267 overlap by 4 nucleotides GFF1267 and GFF1268 are separated by 52 nucleotides GFF1268 and GFF1269 are separated by 179 nucleotides
GFF1266 - Peptide chain release factor 1, at 124,665 to 125,774
GFF1266
GFF1267 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 125,771 to 126,610
GFF1267
GFF1268 - Glutaredoxin-related protein, at 126,663 to 126,986
GFF1268
GFF1269 - ATP-dependent protease domain protein (EC 3.4.21.-), at 127,166 to 128,170
GFF1269
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 125.913 kb on + strand, within GFF1267 at 125.913 kb on + strand, within GFF1267 at 125.913 kb on + strand, within GFF1267 at 125.914 kb on - strand, within GFF1267 at 125.914 kb on - strand, within GFF1267 at 125.981 kb on + strand, within GFF1267 at 125.981 kb on + strand, within GFF1267 at 125.981 kb on + strand, within GFF1267 at 125.981 kb on + strand, within GFF1267 at 125.981 kb on + strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 125.982 kb on - strand, within GFF1267 at 126.332 kb on + strand, within GFF1267 at 126.332 kb on + strand, within GFF1267 at 126.332 kb on + strand, within GFF1267 at 126.332 kb on + strand, within GFF1267 at 126.332 kb on + strand, within GFF1267 at 126.333 kb on - strand, within GFF1267 at 126.333 kb on - strand, within GFF1267 at 126.333 kb on - strand, within GFF1267 at 126.333 kb on - strand, within GFF1267 at 126.333 kb on - strand, within GFF1267 at 126.609 kb on - strand at 126.609 kb on - strand at 126.864 kb on + strand, within GFF1268 at 126.864 kb on + strand, within GFF1268 at 126.864 kb on + strand, within GFF1268 at 126.864 kb on + strand, within GFF1268 at 126.864 kb on + strand, within GFF1268 at 126.864 kb on + strand, within GFF1268 at 126.865 kb on - strand, within GFF1268 at 126.865 kb on - strand, within GFF1268 at 126.894 kb on + strand, within GFF1268 at 126.894 kb on + strand, within GFF1268 at 126.894 kb on + strand, within GFF1268 at 126.894 kb on + strand, within GFF1268 at 126.895 kb on - strand, within GFF1268 at 126.895 kb on - strand, within GFF1268 at 126.895 kb on - strand, within GFF1268 at 126.942 kb on + strand, within GFF1268 at 126.942 kb on + strand, within GFF1268 at 126.942 kb on + strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 126.943 kb on - strand, within GFF1268 at 127.076 kb on + strand at 127.077 kb on - strand at 127.077 kb on - strand at 127.296 kb on - strand, within GFF1269 at 127.391 kb on + strand, within GFF1269 at 127.391 kb on + strand, within GFF1269
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 125,913 + GFF1267 0.17 -1.9 125,913 + GFF1267 0.17 -0.9 125,913 + GFF1267 0.17 -3.0 125,914 - GFF1267 0.17 -2.1 125,914 - GFF1267 0.17 -2.8 125,981 + GFF1267 0.25 -1.9 125,981 + GFF1267 0.25 -1.5 125,981 + GFF1267 0.25 -1.9 125,981 + GFF1267 0.25 -0.9 125,981 + GFF1267 0.25 -1.4 125,982 - GFF1267 0.25 -2.2 125,982 - GFF1267 0.25 -2.3 125,982 - GFF1267 0.25 -1.9 125,982 - GFF1267 0.25 -1.8 125,982 - GFF1267 0.25 -1.7 125,982 - GFF1267 0.25 -2.7 125,982 - GFF1267 0.25 -1.9 126,332 + GFF1267 0.67 -0.0 126,332 + GFF1267 0.67 -0.0 126,332 + GFF1267 0.67 -2.1 126,332 + GFF1267 0.67 -2.5 126,332 + GFF1267 0.67 -0.0 126,333 - GFF1267 0.67 -1.2 126,333 - GFF1267 0.67 -2.8 126,333 - GFF1267 0.67 -3.5 126,333 - GFF1267 0.67 -2.4 126,333 - GFF1267 0.67 -2.6 126,609 - -0.8 126,609 - -0.1 126,864 + GFF1268 0.62 +0.7 126,864 + GFF1268 0.62 -0.1 126,864 + GFF1268 0.62 -0.2 126,864 + GFF1268 0.62 -0.3 126,864 + GFF1268 0.62 -0.3 126,864 + GFF1268 0.62 -0.3 126,865 - GFF1268 0.62 -0.5 126,865 - GFF1268 0.62 -0.5 126,894 + GFF1268 0.71 -0.1 126,894 + GFF1268 0.71 +0.3 126,894 + GFF1268 0.71 -0.6 126,894 + GFF1268 0.71 -2.2 126,895 - GFF1268 0.72 +0.6 126,895 - GFF1268 0.72 -0.5 126,895 - GFF1268 0.72 -0.0 126,942 + GFF1268 0.86 -0.0 126,942 + GFF1268 0.86 -0.4 126,942 + GFF1268 0.86 +0.6 126,943 - GFF1268 0.86 -0.0 126,943 - GFF1268 0.86 +0.1 126,943 - GFF1268 0.86 -0.6 126,943 - GFF1268 0.86 +0.7 126,943 - GFF1268 0.86 -0.1 126,943 - GFF1268 0.86 -0.3 126,943 - GFF1268 0.86 +0.8 126,943 - GFF1268 0.86 +0.1 126,943 - GFF1268 0.86 +0.2 127,076 + +0.3 127,077 - +0.4 127,077 - -0.1 127,296 - GFF1269 0.13 -0.0 127,391 + GFF1269 0.22 -0.0 127,391 + GFF1269 0.22 -0.2
Or see this region's nucleotide sequence