Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1178 and GFF1179 are separated by 34 nucleotides GFF1179 and GFF1180 are separated by 116 nucleotides GFF1180 and GFF1181 are separated by 9 nucleotides
GFF1178 - ABC transporter, permease protein, putative, at 34,732 to 37,275
GFF1178
GFF1179 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 37,310 to 37,942
GFF1179
GFF1180 - membrane protein, at 38,059 to 38,643
GFF1180
GFF1181 - FIG006045: Sigma factor, ECF subfamily, at 38,653 to 39,210
GFF1181
Position (kb) 37
38 Strain fitness (log2 ratio) -1
0
1
2 at 36.315 kb on - strand, within GFF1178 at 36.615 kb on - strand, within GFF1178 at 37.363 kb on - strand at 37.401 kb on + strand, within GFF1179 at 37.402 kb on - strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.596 kb on + strand, within GFF1179 at 37.597 kb on - strand, within GFF1179 at 37.597 kb on - strand, within GFF1179 at 37.599 kb on + strand, within GFF1179 at 37.599 kb on + strand, within GFF1179 at 37.599 kb on + strand, within GFF1179 at 37.600 kb on - strand, within GFF1179 at 37.600 kb on - strand, within GFF1179 at 37.600 kb on - strand, within GFF1179 at 37.632 kb on + strand, within GFF1179 at 37.816 kb on - strand, within GFF1179 at 38.012 kb on + strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.013 kb on - strand at 38.046 kb on + strand at 38.046 kb on + strand at 38.046 kb on + strand at 38.047 kb on - strand at 38.392 kb on + strand, within GFF1180 at 38.392 kb on + strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.584 kb on + strand, within GFF1180 at 38.584 kb on + strand, within GFF1180 at 38.585 kb on - strand at 38.585 kb on - strand at 38.716 kb on + strand, within GFF1181 at 38.716 kb on + strand, within GFF1181 at 38.717 kb on - strand, within GFF1181 at 38.717 kb on - strand, within GFF1181
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 36,315 - GFF1178 0.62 +0.2 36,615 - GFF1178 0.74 +0.3 37,363 - -0.8 37,401 + GFF1179 0.14 +0.3 37,402 - GFF1179 0.15 +1.0 37,596 + GFF1179 0.45 +0.4 37,596 + GFF1179 0.45 +0.7 37,596 + GFF1179 0.45 -0.6 37,596 + GFF1179 0.45 +0.3 37,596 + GFF1179 0.45 +0.5 37,597 - GFF1179 0.45 -0.0 37,597 - GFF1179 0.45 +1.2 37,599 + GFF1179 0.46 +1.7 37,599 + GFF1179 0.46 -0.4 37,599 + GFF1179 0.46 +0.4 37,600 - GFF1179 0.46 +0.9 37,600 - GFF1179 0.46 +0.5 37,600 - GFF1179 0.46 +0.0 37,632 + GFF1179 0.51 -0.1 37,816 - GFF1179 0.80 -0.1 38,012 + -0.6 38,013 - -0.4 38,013 - -0.1 38,013 - +2.2 38,013 - -0.2 38,046 + -0.3 38,046 + -0.7 38,046 + -0.2 38,047 - -0.2 38,392 + GFF1180 0.57 +0.6 38,392 + GFF1180 0.57 -0.0 38,393 - GFF1180 0.57 -0.2 38,393 - GFF1180 0.57 +0.1 38,393 - GFF1180 0.57 +0.1 38,416 + GFF1180 0.61 -0.1 38,416 + GFF1180 0.61 +0.1 38,416 + GFF1180 0.61 +0.4 38,584 + GFF1180 0.90 -0.9 38,584 + GFF1180 0.90 -0.6 38,585 - -0.2 38,585 - -0.1 38,716 + GFF1181 0.11 -0.1 38,716 + GFF1181 0.11 +0.2 38,717 - GFF1181 0.11 -0.1 38,717 - GFF1181 0.11 +1.4
Or see this region's nucleotide sequence