Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1102 and GFF1103 are separated by 461 nucleotides GFF1103 and GFF1104 are separated by 420 nucleotides
GFF1102 - DNA-binding heavy metal response regulator, at 27,285 to 27,971
GFF1102
GFF1103 - Outer membrane protein (porin), at 28,433 to 29,422
GFF1103
GFF1104 - hypothetical protein, at 29,843 to 31,390
GFF1104
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.582 kb on - strand, within GFF1102 at 27.682 kb on + strand, within GFF1102 at 27.682 kb on + strand, within GFF1102 at 27.682 kb on + strand, within GFF1102 at 27.683 kb on - strand, within GFF1102 at 27.723 kb on + strand, within GFF1102 at 27.724 kb on - strand, within GFF1102 at 27.822 kb on + strand, within GFF1102 at 27.936 kb on + strand at 27.936 kb on + strand at 28.052 kb on - strand at 28.052 kb on - strand at 28.295 kb on - strand at 28.389 kb on + strand at 28.389 kb on + strand at 28.395 kb on - strand at 28.395 kb on - strand at 28.395 kb on - strand at 28.430 kb on - strand at 28.435 kb on - strand at 28.495 kb on + strand at 28.495 kb on + strand at 28.496 kb on - strand at 28.496 kb on - strand at 28.496 kb on - strand at 28.531 kb on - strand at 28.533 kb on + strand, within GFF1103 at 28.534 kb on - strand, within GFF1103 at 28.534 kb on - strand, within GFF1103 at 28.539 kb on + strand, within GFF1103 at 28.539 kb on + strand, within GFF1103 at 28.540 kb on - strand, within GFF1103 at 28.540 kb on - strand, within GFF1103 at 28.566 kb on + strand, within GFF1103 at 28.567 kb on - strand, within GFF1103 at 28.617 kb on + strand, within GFF1103 at 28.747 kb on - strand, within GFF1103 at 28.780 kb on - strand, within GFF1103 at 28.824 kb on + strand, within GFF1103 at 29.010 kb on + strand, within GFF1103 at 29.010 kb on + strand, within GFF1103 at 29.014 kb on - strand, within GFF1103 at 29.061 kb on + strand, within GFF1103 at 29.061 kb on + strand, within GFF1103 at 29.062 kb on - strand, within GFF1103 at 29.135 kb on + strand, within GFF1103 at 29.136 kb on - strand, within GFF1103 at 29.136 kb on - strand, within GFF1103 at 29.337 kb on + strand at 29.337 kb on + strand at 29.337 kb on + strand at 29.338 kb on - strand at 29.435 kb on - strand at 29.435 kb on - strand at 29.442 kb on + strand at 29.442 kb on + strand at 29.443 kb on - strand at 29.459 kb on + strand at 29.460 kb on - strand at 29.563 kb on - strand at 29.563 kb on - strand at 29.572 kb on + strand at 29.573 kb on - strand at 29.902 kb on - strand at 29.921 kb on + strand at 29.922 kb on - strand at 29.952 kb on - strand at 29.961 kb on + strand at 29.972 kb on + strand at 29.972 kb on + strand at 29.972 kb on + strand at 29.973 kb on - strand at 29.976 kb on + strand at 30.220 kb on - strand, within GFF1104 at 30.227 kb on + strand, within GFF1104 at 30.227 kb on + strand, within GFF1104 at 30.228 kb on - strand, within GFF1104
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 27,582 - GFF1102 0.43 +0.7 27,682 + GFF1102 0.58 -1.0 27,682 + GFF1102 0.58 +0.2 27,682 + GFF1102 0.58 -0.2 27,683 - GFF1102 0.58 +0.1 27,723 + GFF1102 0.64 -0.4 27,724 - GFF1102 0.64 -0.0 27,822 + GFF1102 0.78 -0.3 27,936 + +0.5 27,936 + -0.0 28,052 - +0.6 28,052 - -0.1 28,295 - +1.1 28,389 + -0.1 28,389 + +0.4 28,395 - -0.7 28,395 - -0.5 28,395 - -0.0 28,430 - +0.6 28,435 - -0.2 28,495 + +1.4 28,495 + -0.2 28,496 - +0.6 28,496 - -0.1 28,496 - -1.4 28,531 - +0.5 28,533 + GFF1103 0.10 +0.6 28,534 - GFF1103 0.10 -0.6 28,534 - GFF1103 0.10 +0.0 28,539 + GFF1103 0.11 +1.0 28,539 + GFF1103 0.11 -0.9 28,540 - GFF1103 0.11 +0.0 28,540 - GFF1103 0.11 -0.1 28,566 + GFF1103 0.13 +0.4 28,567 - GFF1103 0.14 +0.8 28,617 + GFF1103 0.19 -2.7 28,747 - GFF1103 0.32 -0.2 28,780 - GFF1103 0.35 +0.2 28,824 + GFF1103 0.39 +0.0 29,010 + GFF1103 0.58 +0.9 29,010 + GFF1103 0.58 +0.3 29,014 - GFF1103 0.59 +0.5 29,061 + GFF1103 0.63 -0.2 29,061 + GFF1103 0.63 +1.2 29,062 - GFF1103 0.64 +0.7 29,135 + GFF1103 0.71 +0.1 29,136 - GFF1103 0.71 +0.3 29,136 - GFF1103 0.71 -0.2 29,337 + -0.1 29,337 + -0.7 29,337 + -0.2 29,338 - +0.2 29,435 - -0.7 29,435 - +0.2 29,442 + -1.0 29,442 + +0.0 29,443 - +0.1 29,459 + +0.5 29,460 - +0.1 29,563 - -0.0 29,563 - +0.0 29,572 + +0.1 29,573 - -0.2 29,902 - -0.1 29,921 + +0.1 29,922 - +1.8 29,952 - +0.3 29,961 + +0.2 29,972 + +0.9 29,972 + -0.2 29,972 + +2.2 29,973 - -0.0 29,976 + -0.7 30,220 - GFF1104 0.24 +0.3 30,227 + GFF1104 0.25 -0.6 30,227 + GFF1104 0.25 +0.2 30,228 - GFF1104 0.25 -0.9
Or see this region's nucleotide sequence