Strain Fitness in Escherichia fergusonii Becca around EFB2_01799

Experiment: BHIS no phage control with 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with 14 member community plus Klebsiella pneumoniae
1,912,263	-		EFB2_01798	0.19	-0.6
1,912,263	-		EFB2_01798	0.19	-0.4
1,912,263	-		EFB2_01798	0.19	-1.6
1,912,263	-		EFB2_01798	0.19	+0.6
1,912,263	-		EFB2_01798	0.19	+1.6
1,912,263	-		EFB2_01798	0.19	+1.7
1,912,263	-		EFB2_01798	0.19	+0.4
1,912,266	+		EFB2_01798	0.20	-0.7
1,912,266	+		EFB2_01798	0.20	-1.5
1,912,266	+		EFB2_01798	0.20	+0.5
1,912,266	+		EFB2_01798	0.20	-0.8
1,912,266	+		EFB2_01798	0.20	-1.0
1,912,266	+		EFB2_01798	0.20	-1.9
1,912,267	-		EFB2_01798	0.20	+0.1
1,912,267	-		EFB2_01798	0.20	-0.3
1,912,267	-		EFB2_01798	0.20	-1.2
1,912,267	-		EFB2_01798	0.20	+1.9
1,912,267	-		EFB2_01798	0.20	+1.6
1,912,267	-		EFB2_01798	0.20	+0.7
1,912,267	-		EFB2_01798	0.20	-0.8
1,912,293	+		EFB2_01798	0.22	+1.1
1,912,293	+		EFB2_01798	0.22	-1.1
1,912,294	-		EFB2_01798	0.22	-3.5
1,912,295	+		EFB2_01798	0.22	-2.1
1,912,295	+		EFB2_01798	0.22	+0.4
1,912,295	+		EFB2_01798	0.22	+0.5
1,912,295	+		EFB2_01798	0.22	-2.3
1,912,295	+		EFB2_01798	0.22	-0.3
1,912,296	-		EFB2_01798	0.22	-0.4
1,912,296	-		EFB2_01798	0.22	+1.8
1,912,296	-		EFB2_01798	0.22	-1.8
1,912,296	-		EFB2_01798	0.22	+0.3
1,912,326	-		EFB2_01798	0.25	-2.8
1,912,366	+		EFB2_01798	0.28	-1.3
1,912,366	+		EFB2_01798	0.28	-1.7
1,912,366	+		EFB2_01798	0.28	+0.6
1,912,367	-		EFB2_01798	0.28	+0.3
1,912,367	-		EFB2_01798	0.28	-0.8
1,912,367	-		EFB2_01798	0.28	-0.8
1,912,369	+		EFB2_01798	0.28	-1.0
1,912,369	+		EFB2_01798	0.28	-1.2
1,912,369	+		EFB2_01798	0.28	-1.4
1,912,370	-		EFB2_01798	0.28	+0.0
1,912,370	-		EFB2_01798	0.28	-1.4
1,912,370	-		EFB2_01798	0.28	+0.8
1,912,370	-		EFB2_01798	0.28	+0.4
1,912,370	-		EFB2_01798	0.28	-0.4
1,912,370	-		EFB2_01798	0.28	-1.3
1,912,370	-		EFB2_01798	0.28	+0.1
1,912,380	+		EFB2_01798	0.29	+0.7
1,912,380	+		EFB2_01798	0.29	-2.3
1,912,455	-		EFB2_01798	0.35	-1.0
1,912,458	-		EFB2_01798	0.35	-1.7
1,912,458	-		EFB2_01798	0.35	-0.0
1,912,486	-		EFB2_01798	0.38	+0.6
1,912,497	+		EFB2_01798	0.39	+0.6
1,912,497	+		EFB2_01798	0.39	-0.8
1,912,497	+		EFB2_01798	0.39	+2.4
1,912,498	-		EFB2_01798	0.39	+0.5
1,912,498	-		EFB2_01798	0.39	-2.5
1,912,498	-		EFB2_01798	0.39	-3.1
1,912,498	-		EFB2_01798	0.39	+1.1
1,912,780	+		EFB2_01798	0.62	+1.3
1,912,921	+		EFB2_01798	0.73	-2.6
1,912,966	+		EFB2_01798	0.77	-1.1
1,913,061	+		EFB2_01798	0.85	-0.7
1,913,061	+		EFB2_01798	0.85	-2.9
1,913,066	-		EFB2_01798	0.85	-0.2
1,913,066	-		EFB2_01798	0.85	-1.4
1,913,128	+				+2.1
1,913,231	+				+0.3
1,913,241	+				-1.1
1,913,247	+				+0.1
1,913,247	+				-2.3
1,913,262	+				-3.0
1,913,262	+				+0.3
1,913,262	+				+0.7
1,913,262	+				+0.5
1,913,267	+				-1.7
1,913,268	-				-0.4
1,913,401	+		EFB2_01799	0.20	-0.9
1,913,401	+		EFB2_01799	0.20	-0.8
1,913,402	-		EFB2_01799	0.20	-1.1
1,913,421	+		EFB2_01799	0.22	-0.1
1,913,421	+		EFB2_01799	0.22	-0.6
1,913,422	-		EFB2_01799	0.22	-0.2
1,913,422	-		EFB2_01799	0.22	-0.8
1,913,426	-		EFB2_01799	0.23	-0.8
1,913,432	+		EFB2_01799	0.24	+0.4
1,913,433	-		EFB2_01799	0.24	+0.6
1,913,433	-		EFB2_01799	0.24	+0.3
1,913,433	-		EFB2_01799	0.24	-0.6
1,913,433	-		EFB2_01799	0.24	-0.2
1,913,454	+		EFB2_01799	0.27	-3.8
1,913,454	+		EFB2_01799	0.27	-2.9
1,913,460	+		EFB2_01799	0.28	-0.1
1,913,460	+		EFB2_01799	0.28	-2.3
1,913,460	+		EFB2_01799	0.28	-3.0
1,913,461	-		EFB2_01799	0.28	-1.2
1,913,464	+		EFB2_01799	0.28	-1.3
1,913,565	+		EFB2_01799	0.42	-1.1
1,913,565	+		EFB2_01799	0.42	-1.0
1,913,667	+		EFB2_01799	0.55	-2.0
1,913,788	+		EFB2_01799	0.71	-0.6
1,913,788	+		EFB2_01799	0.71	+0.4
1,913,852	+		EFB2_01799	0.80	-0.3
1,913,913	-		EFB2_01799	0.88	-3.4
1,913,919	-		EFB2_01799	0.89	+2.3
1,913,961	+				+0.6
1,913,962	-				-1.7
1,913,962	-				-2.0
1,913,962	-				-2.4
1,913,984	+				-2.4
1,913,984	+				-1.2
1,913,986	+				-2.0
1,913,987	-				-1.0
1,913,987	-				-2.1
1,914,027	-				-2.0
1,914,070	-				+0.7
1,914,107	+		EFB2_01800	0.17	+0.9
1,914,107	+		EFB2_01800	0.17	+0.4
1,914,133	+		EFB2_01800	0.21	-4.0
1,914,162	-		EFB2_01800	0.27	-0.6
1,914,192	+		EFB2_01800	0.32	-2.0
1,914,214	-		EFB2_01800	0.36	-0.4
1,914,231	-		EFB2_01800	0.39	+0.5
1,914,236	+		EFB2_01800	0.40	+1.7
1,914,272	+		EFB2_01800	0.47	-2.0
1,914,273	-		EFB2_01800	0.47	-1.8
1,914,274	+		EFB2_01800	0.47	-1.4
1,914,276	+		EFB2_01800	0.47	-1.7
1,914,329	-		EFB2_01800	0.57	-0.8
1,914,332	+		EFB2_01800	0.58	-0.4
1,914,332	+		EFB2_01800	0.58	+2.0
1,914,333	-		EFB2_01800	0.58	+1.1
1,914,387	+		EFB2_01800	0.68	-0.8
1,914,387	+		EFB2_01800	0.68	+1.9
1,914,489	+		EFB2_01800	0.86	+0.4
1,914,490	-		EFB2_01800	0.86	+0.9
1,914,490	-		EFB2_01800	0.86	-2.8
1,914,575	-				+1.4
1,914,575	-				+1.9
1,914,575	-				-1.4
1,914,584	+				-0.2
1,914,584	+				-1.4
1,914,584	+				+0.8
1,914,584	+				-2.6
1,914,584	+				+0.4
1,914,584	+				-2.4
1,914,584	+				+0.1
1,914,584	+				-2.0
1,914,585	-				+0.5
1,914,585	-				-0.1
1,914,585	-				-2.3
1,914,585	-				-1.5
1,914,585	-				+0.8
1,914,585	-				-1.1
1,914,585	-				-1.6
1,914,638	+				-2.7
1,914,638	+				+1.1
1,914,639	-				-0.8
1,914,639	-				-2.2
1,914,639	-				-0.6
1,914,682	+				-1.8
1,914,682	+				-2.0
1,914,682	+				-0.3
1,914,682	+				+1.6
1,914,682	+				+1.6
1,914,682	+				-1.1
1,914,683	-				+0.6
1,914,683	-				-1.2
1,914,683	-				-0.3
1,914,683	-				-2.2
1,914,683	-				-2.0
1,914,683	-				+0.4
1,914,685	+				-1.3
1,914,685	+				+1.0
1,914,685	+				+1.6
1,914,685	+				+2.0
1,914,685	+				+0.8
1,914,685	+				+0.4
1,914,685	+				+0.7
1,914,686	-				-1.1
1,914,686	-				-2.2
1,914,731	+		EFB2_01801	0.13	+1.2
1,914,732	-		EFB2_01801	0.13	-0.9
1,914,774	-		EFB2_01801	0.16	-0.0
1,914,790	+		EFB2_01801	0.18	+0.9
1,914,790	+		EFB2_01801	0.18	-1.7
1,914,790	+		EFB2_01801	0.18	+0.1
1,914,790	+		EFB2_01801	0.18	+2.4
1,914,790	+		EFB2_01801	0.18	+1.7
1,914,790	+		EFB2_01801	0.18	-2.0
1,914,791	-		EFB2_01801	0.18	+2.2
1,914,791	-		EFB2_01801	0.18	-1.0
1,914,839	+		EFB2_01801	0.22	-2.1
1,914,839	+		EFB2_01801	0.22	-0.6
1,914,839	+		EFB2_01801	0.22	-0.2
1,914,839	+		EFB2_01801	0.22	+3.8
1,914,839	+		EFB2_01801	0.22	-0.1
1,914,839	+		EFB2_01801	0.22	+2.7
1,914,840	-		EFB2_01801	0.22	-3.1
1,914,840	-		EFB2_01801	0.22	+1.2
1,914,840	-		EFB2_01801	0.22	+1.9
1,914,840	-		EFB2_01801	0.22	-2.1
1,914,840	-		EFB2_01801	0.22	+1.7
1,914,840	-		EFB2_01801	0.22	-1.9
1,914,840	-		EFB2_01801	0.22	+0.9
1,914,890	+		EFB2_01801	0.27	+1.4
1,914,890	+		EFB2_01801	0.27	-0.4
1,914,890	+		EFB2_01801	0.27	+0.1
1,914,890	+		EFB2_01801	0.27	+0.8
1,914,890	+		EFB2_01801	0.27	+0.5
1,914,890	+		EFB2_01801	0.27	+0.3
1,914,890	+		EFB2_01801	0.27	-0.4
1,914,891	-		EFB2_01801	0.27	+1.4
1,914,891	-		EFB2_01801	0.27	+0.5
1,914,892	+		EFB2_01801	0.27	-2.2
1,914,893	-		EFB2_01801	0.27	+1.0
1,914,893	-		EFB2_01801	0.27	+0.7
1,914,916	+		EFB2_01801	0.29	+1.4
1,914,974	+		EFB2_01801	0.34	-1.5
1,914,975	-		EFB2_01801	0.34	+1.2
1,914,998	+		EFB2_01801	0.36	+0.7
1,914,998	+		EFB2_01801	0.36	-0.4
1,914,999	-		EFB2_01801	0.36	-0.6
1,914,999	-		EFB2_01801	0.36	-2.0
1,914,999	-		EFB2_01801	0.36	-0.2
1,914,999	-		EFB2_01801	0.36	-1.5
1,914,999	-		EFB2_01801	0.36	+2.1
1,914,999	-		EFB2_01801	0.36	+1.5
1,914,999	-		EFB2_01801	0.36	-2.3
1,914,999	-		EFB2_01801	0.36	-3.2
1,914,999	-		EFB2_01801	0.36	+0.8
1,914,999	-		EFB2_01801	0.36	+0.6
1,914,999	-		EFB2_01801	0.36	-0.0