Strain Fitness in Escherichia fergusonii Becca around EFB2_00857

Experiment: BHIS no phage control with 14 member community plus Klebsiella pneumoniae

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00855 and EFB2_00856 overlap by 4 nucleotidesEFB2_00856 and EFB2_00857 are separated by 11 nucleotidesEFB2_00857 and EFB2_00858 are separated by 15 nucleotides EFB2_00855: EFB2_00855 - Polysialic acid transport protein KpsM, at 877,597 to 878,373 _00855 EFB2_00856: EFB2_00856 - Polysialic acid transport ATP-binding protein KpsT, at 878,370 to 879,041 _00856 EFB2_00857: EFB2_00857 - Glycerol-3-phosphate cytidylyltransferase, at 879,053 to 879,448 _00857 EFB2_00858: EFB2_00858 - hypothetical protein, at 879,464 to 880,699 _00858 Position (kb) 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 878.072 kb on + strand, within EFB2_00855at 878.073 kb on - strand, within EFB2_00855at 878.075 kb on + strand, within EFB2_00855at 878.075 kb on + strand, within EFB2_00855at 878.076 kb on - strand, within EFB2_00855at 878.091 kb on + strand, within EFB2_00855at 878.126 kb on + strand, within EFB2_00855at 878.192 kb on - strand, within EFB2_00855at 878.192 kb on - strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.205 kb on - strand, within EFB2_00855at 878.205 kb on - strand, within EFB2_00855at 878.219 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.232 kb on - strand, within EFB2_00855at 878.232 kb on - strand, within EFB2_00855at 878.237 kb on + strand, within EFB2_00855at 878.238 kb on - strand, within EFB2_00855at 878.238 kb on - strand, within EFB2_00855at 878.253 kb on + strand, within EFB2_00855at 878.253 kb on + strand, within EFB2_00855at 878.253 kb on + strand, within EFB2_00855at 878.254 kb on - strand, within EFB2_00855at 878.254 kb on - strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.264 kb on - strand, within EFB2_00855at 878.264 kb on - strand, within EFB2_00855at 878.264 kb on - strand, within EFB2_00855at 878.266 kb on - strand, within EFB2_00855at 878.266 kb on - strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.338 kb on + strandat 878.338 kb on + strandat 878.339 kb on - strandat 878.339 kb on - strandat 878.375 kb on + strandat 878.375 kb on + strandat 878.375 kb on + strandat 878.375 kb on + strandat 878.376 kb on - strandat 878.376 kb on - strandat 878.376 kb on - strandat 878.401 kb on - strandat 878.424 kb on + strandat 878.424 kb on + strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.440 kb on + strand, within EFB2_00856at 878.478 kb on - strand, within EFB2_00856at 878.499 kb on - strand, within EFB2_00856at 878.562 kb on - strand, within EFB2_00856at 878.572 kb on + strand, within EFB2_00856at 878.573 kb on - strand, within EFB2_00856at 878.650 kb on + strand, within EFB2_00856at 878.650 kb on + strand, within EFB2_00856at 878.653 kb on - strand, within EFB2_00856at 878.715 kb on - strand, within EFB2_00856at 878.715 kb on - strand, within EFB2_00856at 878.718 kb on + strand, within EFB2_00856at 878.719 kb on - strand, within EFB2_00856at 878.754 kb on - strand, within EFB2_00856at 878.779 kb on + strand, within EFB2_00856at 878.793 kb on - strand, within EFB2_00856at 878.802 kb on + strand, within EFB2_00856at 878.805 kb on + strand, within EFB2_00856at 878.805 kb on + strand, within EFB2_00856at 878.806 kb on - strand, within EFB2_00856at 878.806 kb on - strand, within EFB2_00856at 878.806 kb on - strand, within EFB2_00856at 878.807 kb on + strand, within EFB2_00856at 878.808 kb on - strand, within EFB2_00856at 878.821 kb on + strand, within EFB2_00856at 878.951 kb on - strand, within EFB2_00856at 878.954 kb on + strand, within EFB2_00856at 879.088 kb on - strandat 879.096 kb on + strand, within EFB2_00857at 879.097 kb on - strand, within EFB2_00857at 879.105 kb on + strand, within EFB2_00857at 879.110 kb on - strand, within EFB2_00857at 879.110 kb on - strand, within EFB2_00857at 879.295 kb on + strand, within EFB2_00857at 879.316 kb on + strand, within EFB2_00857at 879.370 kb on - strand, within EFB2_00857at 879.421 kb on - strandat 879.537 kb on + strandat 879.541 kb on - strandat 879.541 kb on - strandat 879.641 kb on + strand, within EFB2_00858at 879.677 kb on + strand, within EFB2_00858at 879.677 kb on + strand, within EFB2_00858at 879.678 kb on - strand, within EFB2_00858at 879.678 kb on - strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.680 kb on - strand, within EFB2_00858at 879.680 kb on - strand, within EFB2_00858at 879.681 kb on + strand, within EFB2_00858at 879.682 kb on - strand, within EFB2_00858at 879.718 kb on - strand, within EFB2_00858at 879.731 kb on - strand, within EFB2_00858at 879.740 kb on + strand, within EFB2_00858at 879.798 kb on + strand, within EFB2_00858at 879.802 kb on + strand, within EFB2_00858at 879.802 kb on + strand, within EFB2_00858at 879.889 kb on - strand, within EFB2_00858at 879.917 kb on + strand, within EFB2_00858at 879.925 kb on + strand, within EFB2_00858at 879.928 kb on - strand, within EFB2_00858at 879.942 kb on - strand, within EFB2_00858at 879.964 kb on - strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.988 kb on - strand, within EFB2_00858at 879.989 kb on + strand, within EFB2_00858at 879.989 kb on + strand, within EFB2_00858at 879.990 kb on - strand, within EFB2_00858at 880.049 kb on - strand, within EFB2_00858at 880.132 kb on + strand, within EFB2_00858at 880.140 kb on + strand, within EFB2_00858at 880.213 kb on + strand, within EFB2_00858at 880.221 kb on + strand, within EFB2_00858at 880.297 kb on + strand, within EFB2_00858at 880.312 kb on + strand, within EFB2_00858at 880.312 kb on + strand, within EFB2_00858at 880.313 kb on - strand, within EFB2_00858at 880.313 kb on - strand, within EFB2_00858at 880.333 kb on + strand, within EFB2_00858at 880.382 kb on + strand, within EFB2_00858at 880.383 kb on - strand, within EFB2_00858at 880.417 kb on + strand, within EFB2_00858at 880.427 kb on - strand, within EFB2_00858

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control with 14 member community plus Klebsiella pneumoniae
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878,072 + EFB2_00855 0.61 -1.5
878,073 - EFB2_00855 0.61 -1.0
878,075 + EFB2_00855 0.62 -0.6
878,075 + EFB2_00855 0.62 +0.8
878,076 - EFB2_00855 0.62 -0.3
878,091 + EFB2_00855 0.64 -0.0
878,126 + EFB2_00855 0.68 -0.6
878,192 - EFB2_00855 0.77 -0.9
878,192 - EFB2_00855 0.77 -3.4
878,200 + EFB2_00855 0.78 +0.1
878,200 + EFB2_00855 0.78 +1.7
878,200 + EFB2_00855 0.78 -0.5
878,200 + EFB2_00855 0.78 +0.1
878,200 + EFB2_00855 0.78 -0.8
878,200 + EFB2_00855 0.78 +2.7
878,200 + EFB2_00855 0.78 +0.0
878,200 + EFB2_00855 0.78 +1.0
878,201 - EFB2_00855 0.78 -2.6
878,201 - EFB2_00855 0.78 -2.0
878,201 - EFB2_00855 0.78 -2.1
878,201 - EFB2_00855 0.78 -3.1
878,201 - EFB2_00855 0.78 -1.1
878,201 - EFB2_00855 0.78 +1.4
878,204 + EFB2_00855 0.78 -3.4
878,204 + EFB2_00855 0.78 +0.0
878,204 + EFB2_00855 0.78 +0.1
878,204 + EFB2_00855 0.78 +0.3
878,204 + EFB2_00855 0.78 -0.4
878,204 + EFB2_00855 0.78 +0.6
878,205 - EFB2_00855 0.78 -0.1
878,205 - EFB2_00855 0.78 +0.2
878,219 + EFB2_00855 0.80 -2.3
878,231 + EFB2_00855 0.82 -0.4
878,231 + EFB2_00855 0.82 +0.6
878,231 + EFB2_00855 0.82 -1.2
878,231 + EFB2_00855 0.82 -2.1
878,232 - EFB2_00855 0.82 -0.4
878,232 - EFB2_00855 0.82 -0.4
878,237 + EFB2_00855 0.82 +0.2
878,238 - EFB2_00855 0.82 -0.5
878,238 - EFB2_00855 0.82 +0.3
878,253 + EFB2_00855 0.84 -0.2
878,253 + EFB2_00855 0.84 +1.2
878,253 + EFB2_00855 0.84 -0.4
878,254 - EFB2_00855 0.85 -0.6
878,254 - EFB2_00855 0.85 -0.8
878,263 + EFB2_00855 0.86 -0.9
878,263 + EFB2_00855 0.86 +0.3
878,263 + EFB2_00855 0.86 -0.5
878,263 + EFB2_00855 0.86 -0.2
878,263 + EFB2_00855 0.86 -2.2
878,263 + EFB2_00855 0.86 +0.4
878,263 + EFB2_00855 0.86 +0.1
878,263 + EFB2_00855 0.86 -0.7
878,264 - EFB2_00855 0.86 -2.6
878,264 - EFB2_00855 0.86 +1.2
878,264 - EFB2_00855 0.86 -1.8
878,266 - EFB2_00855 0.86 +0.3
878,266 - EFB2_00855 0.86 -0.7
878,290 + EFB2_00855 0.89 -1.1
878,290 + EFB2_00855 0.89 -3.0
878,290 + EFB2_00855 0.89 -2.4
878,290 + EFB2_00855 0.89 +1.6
878,338 + -2.6
878,338 + +0.0
878,339 - +0.2
878,339 - -0.4
878,375 + +1.1
878,375 + -0.8
878,375 + -0.7
878,375 + +0.1
878,376 - +1.4
878,376 - -0.8
878,376 - -1.7
878,401 - +0.5
878,424 + +1.7
878,424 + +0.3
878,425 - +0.4
878,425 - +0.7
878,425 - -2.5
878,425 - -1.0
878,425 - +0.7
878,440 + EFB2_00856 0.10 +2.3
878,478 - EFB2_00856 0.16 -0.5
878,499 - EFB2_00856 0.19 +1.2
878,562 - EFB2_00856 0.29 -0.8
878,572 + EFB2_00856 0.30 -2.0
878,573 - EFB2_00856 0.30 +0.9
878,650 + EFB2_00856 0.42 -0.1
878,650 + EFB2_00856 0.42 +0.0
878,653 - EFB2_00856 0.42 -1.5
878,715 - EFB2_00856 0.51 -1.5
878,715 - EFB2_00856 0.51 +0.7
878,718 + EFB2_00856 0.52 +0.2
878,719 - EFB2_00856 0.52 +0.4
878,754 - EFB2_00856 0.57 +1.6
878,779 + EFB2_00856 0.61 -0.6
878,793 - EFB2_00856 0.63 -3.2
878,802 + EFB2_00856 0.64 -0.7
878,805 + EFB2_00856 0.65 -2.2
878,805 + EFB2_00856 0.65 -3.1
878,806 - EFB2_00856 0.65 -0.5
878,806 - EFB2_00856 0.65 +0.7
878,806 - EFB2_00856 0.65 +0.2
878,807 + EFB2_00856 0.65 -0.8
878,808 - EFB2_00856 0.65 -1.2
878,821 + EFB2_00856 0.67 +0.9
878,951 - EFB2_00856 0.86 -0.1
878,954 + EFB2_00856 0.87 -2.8
879,088 - +0.9
879,096 + EFB2_00857 0.11 +0.0
879,097 - EFB2_00857 0.11 +0.3
879,105 + EFB2_00857 0.13 +2.1
879,110 - EFB2_00857 0.14 +0.1
879,110 - EFB2_00857 0.14 -1.4
879,295 + EFB2_00857 0.61 -0.3
879,316 + EFB2_00857 0.66 +1.8
879,370 - EFB2_00857 0.80 +1.2
879,421 - -0.9
879,537 + -1.6
879,541 - -1.3
879,541 - +0.9
879,641 + EFB2_00858 0.14 -0.5
879,677 + EFB2_00858 0.17 +1.2
879,677 + EFB2_00858 0.17 +0.8
879,678 - EFB2_00858 0.17 -0.8
879,678 - EFB2_00858 0.17 +0.2
879,679 + EFB2_00858 0.17 -1.2
879,679 + EFB2_00858 0.17 -1.0
879,679 + EFB2_00858 0.17 -0.1
879,679 + EFB2_00858 0.17 -2.3
879,680 - EFB2_00858 0.17 +1.2
879,680 - EFB2_00858 0.17 -1.9
879,681 + EFB2_00858 0.18 +2.2
879,682 - EFB2_00858 0.18 +1.0
879,718 - EFB2_00858 0.21 -0.1
879,731 - EFB2_00858 0.22 -0.4
879,740 + EFB2_00858 0.22 -0.6
879,798 + EFB2_00858 0.27 -2.3
879,802 + EFB2_00858 0.27 -1.0
879,802 + EFB2_00858 0.27 -0.6
879,889 - EFB2_00858 0.34 +1.7
879,917 + EFB2_00858 0.37 -0.5
879,925 + EFB2_00858 0.37 -1.0
879,928 - EFB2_00858 0.38 +0.3
879,942 - EFB2_00858 0.39 +0.4
879,964 - EFB2_00858 0.40 -0.5
879,987 + EFB2_00858 0.42 +1.0
879,987 + EFB2_00858 0.42 -0.3
879,987 + EFB2_00858 0.42 +2.2
879,987 + EFB2_00858 0.42 +0.8
879,987 + EFB2_00858 0.42 +0.5
879,988 - EFB2_00858 0.42 +0.4
879,989 + EFB2_00858 0.42 -0.2
879,989 + EFB2_00858 0.42 -2.9
879,990 - EFB2_00858 0.43 +0.7
880,049 - EFB2_00858 0.47 -3.1
880,132 + EFB2_00858 0.54 -0.6
880,140 + EFB2_00858 0.55 -0.4
880,213 + EFB2_00858 0.61 -0.2
880,221 + EFB2_00858 0.61 -1.1
880,297 + EFB2_00858 0.67 +1.2
880,312 + EFB2_00858 0.69 -1.2
880,312 + EFB2_00858 0.69 -1.2
880,313 - EFB2_00858 0.69 +0.9
880,313 - EFB2_00858 0.69 +0.5
880,333 + EFB2_00858 0.70 +1.8
880,382 + EFB2_00858 0.74 +1.2
880,383 - EFB2_00858 0.74 -0.2
880,417 + EFB2_00858 0.77 -0.6
880,427 - EFB2_00858 0.78 +0.6

Or see this region's nucleotide sequence