Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS03250

Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS03240 and murI overlap by 8 nucleotidesmurI and COO64_RS03250 are separated by 116 nucleotidesCOO64_RS03250 and COO64_RS03255 are separated by 24 nucleotidesCOO64_RS03255 and phrB overlap by 4 nucleotides COO64_RS03240: COO64_RS03240 - molybdopterin-synthase adenylyltransferase MoeB, at 125,888 to 126,643 _RS03240 COO64_RS03245: murI - glutamate racemase, at 126,636 to 127,436 murI COO64_RS03250: COO64_RS03250 - acyloxyacyl hydrolase, at 127,553 to 128,071 _RS03250 COO64_RS03255: COO64_RS03255 - SDR family NAD(P)-dependent oxidoreductase, at 128,096 to 128,818 _RS03255 COO64_RS03260: phrB - deoxyribodipyrimidine photo-lyase, at 128,815 to 130,257 phrB Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1 2 3 4at 127.403 kb on + strandat 127.404 kb on - strandat 127.404 kb on - strandat 127.435 kb on - strandat 127.471 kb on + strandat 127.471 kb on + strandat 127.498 kb on - strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.609 kb on + strand, within COO64_RS03250at 127.609 kb on + strand, within COO64_RS03250at 127.629 kb on + strand, within COO64_RS03250at 127.629 kb on + strand, within COO64_RS03250at 127.629 kb on + strand, within COO64_RS03250at 127.630 kb on - strand, within COO64_RS03250at 127.630 kb on - strand, within COO64_RS03250at 127.630 kb on - strand, within COO64_RS03250at 127.630 kb on - strand, within COO64_RS03250at 127.630 kb on - strand, within COO64_RS03250at 127.671 kb on - strand, within COO64_RS03250at 127.671 kb on - strand, within COO64_RS03250at 127.671 kb on - strand, within COO64_RS03250at 127.717 kb on + strand, within COO64_RS03250at 127.717 kb on + strand, within COO64_RS03250at 127.717 kb on + strand, within COO64_RS03250at 127.718 kb on - strand, within COO64_RS03250at 127.718 kb on - strand, within COO64_RS03250at 127.718 kb on - strand, within COO64_RS03250at 127.718 kb on - strand, within COO64_RS03250at 127.722 kb on + strand, within COO64_RS03250at 127.722 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.754 kb on + strand, within COO64_RS03250at 127.755 kb on - strand, within COO64_RS03250at 127.755 kb on - strand, within COO64_RS03250at 127.755 kb on - strand, within COO64_RS03250at 127.755 kb on - strand, within COO64_RS03250at 127.760 kb on + strand, within COO64_RS03250at 127.760 kb on + strand, within COO64_RS03250at 127.761 kb on - strand, within COO64_RS03250at 127.761 kb on - strand, within COO64_RS03250at 127.761 kb on - strand, within COO64_RS03250at 127.761 kb on - strand, within COO64_RS03250at 127.850 kb on + strand, within COO64_RS03250at 127.850 kb on + strand, within COO64_RS03250at 127.851 kb on - strand, within COO64_RS03250at 127.851 kb on - strand, within COO64_RS03250at 127.904 kb on - strand, within COO64_RS03250at 127.977 kb on + strand, within COO64_RS03250at 127.977 kb on + strand, within COO64_RS03250at 127.977 kb on + strand, within COO64_RS03250at 127.977 kb on + strand, within COO64_RS03250at 127.977 kb on + strand, within COO64_RS03250at 127.978 kb on - strand, within COO64_RS03250at 127.978 kb on - strand, within COO64_RS03250at 127.978 kb on - strand, within COO64_RS03250at 127.978 kb on - strand, within COO64_RS03250at 127.978 kb on - strand, within COO64_RS03250at 127.983 kb on + strand, within COO64_RS03250at 127.983 kb on + strand, within COO64_RS03250at 127.983 kb on + strand, within COO64_RS03250at 127.984 kb on - strand, within COO64_RS03250at 127.984 kb on - strand, within COO64_RS03250at 127.997 kb on + strand, within COO64_RS03250at 128.054 kb on + strandat 128.054 kb on + strandat 128.055 kb on - strandat 128.059 kb on + strandat 128.059 kb on + strandat 128.060 kb on - strandat 128.060 kb on - strandat 128.060 kb on - strandat 128.060 kb on - strandat 128.060 kb on - strandat 128.097 kb on + strandat 128.097 kb on + strandat 128.098 kb on - strandat 128.098 kb on - strandat 128.296 kb on + strand, within COO64_RS03255at 128.397 kb on + strand, within COO64_RS03255at 128.541 kb on + strand, within COO64_RS03255at 128.542 kb on - strand, within COO64_RS03255at 128.654 kb on + strand, within COO64_RS03255at 128.654 kb on + strand, within COO64_RS03255at 128.654 kb on + strand, within COO64_RS03255at 128.655 kb on - strand, within COO64_RS03255at 128.655 kb on - strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.690 kb on + strand, within COO64_RS03255at 128.691 kb on - strand, within COO64_RS03255at 128.691 kb on - strand, within COO64_RS03255at 128.822 kb on - strandat 128.901 kb on + strandat 128.901 kb on + strandat 128.901 kb on + strandat 128.901 kb on + strandat 128.902 kb on - strandat 128.902 kb on - strandat 128.902 kb on - strandat 128.902 kb on - strandat 128.902 kb on - strandat 128.919 kb on + strandat 128.919 kb on + strandat 128.920 kb on - strandat 128.920 kb on - strandat 128.920 kb on - strandat 128.920 kb on - strandat 128.920 kb on - strandat 128.920 kb on - strandat 128.923 kb on - strandat 128.923 kb on - strandat 129.063 kb on - strand, within phrB

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X
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127,403 + -0.4
127,404 - +0.5
127,404 - -0.1
127,435 - +1.9
127,471 + +0.3
127,471 + +0.3
127,498 - -0.3
127,533 + +0.7
127,533 + +0.3
127,533 + +0.3
127,533 + +0.4
127,534 - -0.1
127,534 - -0.7
127,609 + COO64_RS03250 0.11 -0.9
127,609 + COO64_RS03250 0.11 +0.4
127,629 + COO64_RS03250 0.15 -0.4
127,629 + COO64_RS03250 0.15 -0.4
127,629 + COO64_RS03250 0.15 +0.2
127,630 - COO64_RS03250 0.15 -0.6
127,630 - COO64_RS03250 0.15 -0.7
127,630 - COO64_RS03250 0.15 -0.8
127,630 - COO64_RS03250 0.15 -1.4
127,630 - COO64_RS03250 0.15 -0.8
127,671 - COO64_RS03250 0.23 +0.6
127,671 - COO64_RS03250 0.23 +0.3
127,671 - COO64_RS03250 0.23 +0.4
127,717 + COO64_RS03250 0.32 -0.2
127,717 + COO64_RS03250 0.32 +1.2
127,717 + COO64_RS03250 0.32 -0.0
127,718 - COO64_RS03250 0.32 +0.8
127,718 - COO64_RS03250 0.32 -1.1
127,718 - COO64_RS03250 0.32 +0.4
127,718 - COO64_RS03250 0.32 -0.7
127,722 + COO64_RS03250 0.33 +0.3
127,722 + COO64_RS03250 0.33 -1.2
127,754 + COO64_RS03250 0.39 +0.1
127,754 + COO64_RS03250 0.39 -0.6
127,754 + COO64_RS03250 0.39 +0.2
127,754 + COO64_RS03250 0.39 +0.6
127,754 + COO64_RS03250 0.39 -1.0
127,754 + COO64_RS03250 0.39 +0.1
127,754 + COO64_RS03250 0.39 +0.8
127,754 + COO64_RS03250 0.39 -0.7
127,755 - COO64_RS03250 0.39 +0.6
127,755 - COO64_RS03250 0.39 +1.2
127,755 - COO64_RS03250 0.39 -0.4
127,755 - COO64_RS03250 0.39 -0.6
127,760 + COO64_RS03250 0.40 -0.7
127,760 + COO64_RS03250 0.40 -0.2
127,761 - COO64_RS03250 0.40 +1.6
127,761 - COO64_RS03250 0.40 +0.1
127,761 - COO64_RS03250 0.40 +0.3
127,761 - COO64_RS03250 0.40 +0.0
127,850 + COO64_RS03250 0.57 +0.0
127,850 + COO64_RS03250 0.57 +0.2
127,851 - COO64_RS03250 0.57 +0.2
127,851 - COO64_RS03250 0.57 +0.2
127,904 - COO64_RS03250 0.68 -0.9
127,977 + COO64_RS03250 0.82 -1.7
127,977 + COO64_RS03250 0.82 -0.9
127,977 + COO64_RS03250 0.82 -0.5
127,977 + COO64_RS03250 0.82 -0.7
127,977 + COO64_RS03250 0.82 -0.6
127,978 - COO64_RS03250 0.82 -1.7
127,978 - COO64_RS03250 0.82 -0.3
127,978 - COO64_RS03250 0.82 +0.4
127,978 - COO64_RS03250 0.82 -0.3
127,978 - COO64_RS03250 0.82 -0.2
127,983 + COO64_RS03250 0.83 -1.1
127,983 + COO64_RS03250 0.83 -0.3
127,983 + COO64_RS03250 0.83 -0.1
127,984 - COO64_RS03250 0.83 +0.4
127,984 - COO64_RS03250 0.83 -0.1
127,997 + COO64_RS03250 0.86 +1.6
128,054 + -1.5
128,054 + -0.6
128,055 - -0.5
128,059 + +0.1
128,059 + +0.1
128,060 - +0.8
128,060 - +0.3
128,060 - +3.8
128,060 - -0.4
128,060 - +0.5
128,097 + +0.9
128,097 + +0.3
128,098 - -0.8
128,098 - +0.4
128,296 + COO64_RS03255 0.28 +1.0
128,397 + COO64_RS03255 0.42 -0.4
128,541 + COO64_RS03255 0.62 -0.0
128,542 - COO64_RS03255 0.62 +0.0
128,654 + COO64_RS03255 0.77 +0.3
128,654 + COO64_RS03255 0.77 +0.3
128,654 + COO64_RS03255 0.77 +0.3
128,655 - COO64_RS03255 0.77 -0.2
128,655 - COO64_RS03255 0.77 -0.7
128,690 + COO64_RS03255 0.82 -0.0
128,690 + COO64_RS03255 0.82 -0.4
128,690 + COO64_RS03255 0.82 -1.2
128,690 + COO64_RS03255 0.82 +1.0
128,690 + COO64_RS03255 0.82 +0.8
128,690 + COO64_RS03255 0.82 -0.6
128,690 + COO64_RS03255 0.82 +0.6
128,691 - COO64_RS03255 0.82 -0.2
128,691 - COO64_RS03255 0.82 -0.7
128,822 - -0.5
128,901 + -0.9
128,901 + +0.2
128,901 + +0.3
128,901 + -0.2
128,902 - +1.3
128,902 - +0.8
128,902 - +0.1
128,902 - -0.6
128,902 - -0.1
128,919 + +0.5
128,919 + -0.5
128,920 - -0.2
128,920 - -0.4
128,920 - +0.2
128,920 - -1.6
128,920 - -0.2
128,920 - +0.9
128,923 - -0.1
128,923 - +0.7
129,063 - phrB COO64_RS03260 0.17 -0.6

Or see this region's nucleotide sequence