Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04064

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04062 and BACOVA_04063 are separated by 152 nucleotidesBACOVA_04063 and BACOVA_04064 are separated by 73 nucleotidesBACOVA_04064 and BACOVA_04065 are separated by 432 nucleotidesBACOVA_04065 and BACOVA_04066 are separated by 98 nucleotides BACOVA_04062: BACOVA_04062 - aminotransferase, class I/II, at 393,782 to 395,098 _04062 BACOVA_04063: BACOVA_04063 - tRNA-Asp, at 395,251 to 395,324 _04063 BACOVA_04064: BACOVA_04064 - beta-ketoacyl-acyl-carrier-protein synthase III, at 395,398 to 396,402 _04064 BACOVA_04065: BACOVA_04065 - hypothetical protein, at 396,835 to 397,059 _04065 BACOVA_04066: BACOVA_04066 - hypothetical protein, at 397,158 to 397,295 _04066 Position (kb) 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2 3at 394.403 kb on + strand, within BACOVA_04062at 394.404 kb on - strand, within BACOVA_04062at 394.554 kb on - strand, within BACOVA_04062at 394.556 kb on - strand, within BACOVA_04062at 394.572 kb on + strand, within BACOVA_04062at 394.748 kb on - strand, within BACOVA_04062at 394.748 kb on - strand, within BACOVA_04062at 394.790 kb on + strand, within BACOVA_04062at 394.790 kb on + strand, within BACOVA_04062at 394.817 kb on - strand, within BACOVA_04062at 394.817 kb on - strand, within BACOVA_04062at 394.867 kb on - strand, within BACOVA_04062at 394.868 kb on + strand, within BACOVA_04062at 394.961 kb on - strand, within BACOVA_04062at 395.020 kb on + strandat 395.114 kb on - strandat 395.116 kb on + strandat 395.139 kb on - strandat 395.146 kb on - strandat 395.259 kb on - strand, within BACOVA_04063at 395.272 kb on - strand, within BACOVA_04063at 395.399 kb on + strandat 395.417 kb on + strandat 395.433 kb on - strandat 395.470 kb on - strandat 395.541 kb on + strand, within BACOVA_04064at 395.541 kb on + strand, within BACOVA_04064at 395.541 kb on + strand, within BACOVA_04064at 395.688 kb on + strand, within BACOVA_04064at 395.723 kb on + strand, within BACOVA_04064at 395.724 kb on - strand, within BACOVA_04064at 395.724 kb on - strand, within BACOVA_04064at 395.737 kb on - strand, within BACOVA_04064at 395.737 kb on - strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.756 kb on + strand, within BACOVA_04064at 395.770 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.793 kb on + strand, within BACOVA_04064at 395.794 kb on - strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.800 kb on - strand, within BACOVA_04064at 395.814 kb on + strand, within BACOVA_04064at 395.865 kb on + strand, within BACOVA_04064at 395.883 kb on + strand, within BACOVA_04064at 395.883 kb on + strand, within BACOVA_04064at 395.980 kb on + strand, within BACOVA_04064at 395.980 kb on + strand, within BACOVA_04064at 395.986 kb on + strand, within BACOVA_04064at 396.042 kb on - strand, within BACOVA_04064at 396.110 kb on - strand, within BACOVA_04064at 396.110 kb on - strand, within BACOVA_04064at 396.153 kb on + strand, within BACOVA_04064at 396.157 kb on + strand, within BACOVA_04064at 396.157 kb on + strand, within BACOVA_04064at 396.175 kb on - strand, within BACOVA_04064at 396.206 kb on - strand, within BACOVA_04064at 396.229 kb on + strand, within BACOVA_04064at 396.233 kb on + strand, within BACOVA_04064at 396.234 kb on - strand, within BACOVA_04064at 396.234 kb on - strand, within BACOVA_04064at 396.264 kb on + strand, within BACOVA_04064at 396.351 kb on - strandat 396.358 kb on + strandat 396.359 kb on - strandat 396.362 kb on + strandat 396.363 kb on - strandat 396.378 kb on + strandat 396.379 kb on - strandat 396.414 kb on - strandat 396.500 kb on - strandat 396.527 kb on + strandat 396.528 kb on - strandat 396.684 kb on + strandat 396.689 kb on + strandat 396.710 kb on - strandat 396.824 kb on + strandat 396.830 kb on - strandat 396.832 kb on + strandat 396.833 kb on - strandat 396.861 kb on + strand, within BACOVA_04065at 396.861 kb on + strand, within BACOVA_04065at 396.874 kb on - strand, within BACOVA_04065at 397.035 kb on + strand, within BACOVA_04065at 397.036 kb on - strand, within BACOVA_04065at 397.077 kb on + strandat 397.077 kb on + strandat 397.078 kb on - strandat 397.078 kb on - strandat 397.079 kb on + strandat 397.089 kb on + strandat 397.124 kb on + strandat 397.125 kb on - strandat 397.211 kb on + strand, within BACOVA_04066at 397.232 kb on - strand, within BACOVA_04066at 397.273 kb on - strand, within BACOVA_04066at 397.310 kb on - strandat 397.365 kb on + strandat 397.370 kb on + strandat 397.381 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
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394,403 + BACOVA_04062 0.47 -1.1
394,404 - BACOVA_04062 0.47 +0.2
394,554 - BACOVA_04062 0.59 +0.2
394,556 - BACOVA_04062 0.59 -0.1
394,572 + BACOVA_04062 0.60 -0.3
394,748 - BACOVA_04062 0.73 -0.0
394,748 - BACOVA_04062 0.73 -0.5
394,790 + BACOVA_04062 0.77 +0.2
394,790 + BACOVA_04062 0.77 -0.5
394,817 - BACOVA_04062 0.79 -2.5
394,817 - BACOVA_04062 0.79 -0.6
394,867 - BACOVA_04062 0.82 +0.4
394,868 + BACOVA_04062 0.82 -0.4
394,961 - BACOVA_04062 0.90 +0.9
395,020 + +0.3
395,114 - +0.4
395,116 + -1.5
395,139 - +0.3
395,146 - -1.1
395,259 - BACOVA_04063 0.11 -1.1
395,272 - BACOVA_04063 0.28 -1.3
395,399 + -0.1
395,417 + +0.5
395,433 - +0.0
395,470 - +0.6
395,541 + BACOVA_04064 0.14 +0.4
395,541 + BACOVA_04064 0.14 +1.9
395,541 + BACOVA_04064 0.14 +0.6
395,688 + BACOVA_04064 0.29 +1.4
395,723 + BACOVA_04064 0.32 -2.4
395,724 - BACOVA_04064 0.32 -0.5
395,724 - BACOVA_04064 0.32 +1.0
395,737 - BACOVA_04064 0.34 -1.3
395,737 - BACOVA_04064 0.34 +0.1
395,754 + BACOVA_04064 0.35 -0.0
395,754 + BACOVA_04064 0.35 +1.7
395,754 + BACOVA_04064 0.35 -0.3
395,756 + BACOVA_04064 0.36 +0.5
395,770 - BACOVA_04064 0.37 +0.5
395,779 - BACOVA_04064 0.38 -0.8
395,779 - BACOVA_04064 0.38 -0.5
395,779 - BACOVA_04064 0.38 +0.3
395,793 + BACOVA_04064 0.39 -0.8
395,794 - BACOVA_04064 0.39 +0.0
395,797 + BACOVA_04064 0.40 +0.3
395,797 + BACOVA_04064 0.40 +0.9
395,797 + BACOVA_04064 0.40 +0.9
395,800 - BACOVA_04064 0.40 +1.3
395,814 + BACOVA_04064 0.41 +0.6
395,865 + BACOVA_04064 0.46 -0.0
395,883 + BACOVA_04064 0.48 -0.2
395,883 + BACOVA_04064 0.48 +1.0
395,980 + BACOVA_04064 0.58 +1.1
395,980 + BACOVA_04064 0.58 -1.6
395,986 + BACOVA_04064 0.59 -1.4
396,042 - BACOVA_04064 0.64 -1.7
396,110 - BACOVA_04064 0.71 +0.6
396,110 - BACOVA_04064 0.71 -1.1
396,153 + BACOVA_04064 0.75 +0.6
396,157 + BACOVA_04064 0.76 -0.6
396,157 + BACOVA_04064 0.76 +0.0
396,175 - BACOVA_04064 0.77 -1.3
396,206 - BACOVA_04064 0.80 -0.3
396,229 + BACOVA_04064 0.83 +0.3
396,233 + BACOVA_04064 0.83 -0.6
396,234 - BACOVA_04064 0.83 +0.1
396,234 - BACOVA_04064 0.83 +1.0
396,264 + BACOVA_04064 0.86 -0.2
396,351 - +0.4
396,358 + +1.2
396,359 - -1.1
396,362 + -0.0
396,363 - +2.3
396,378 + -1.4
396,379 - +0.3
396,414 - -0.0
396,500 - +2.9
396,527 + -0.8
396,528 - +0.2
396,684 + -0.8
396,689 + +1.9
396,710 - +0.2
396,824 + +0.4
396,830 - -1.5
396,832 + +0.4
396,833 - +1.4
396,861 + BACOVA_04065 0.12 +0.1
396,861 + BACOVA_04065 0.12 -1.1
396,874 - BACOVA_04065 0.17 -2.0
397,035 + BACOVA_04065 0.89 +0.1
397,036 - BACOVA_04065 0.89 -1.1
397,077 + +0.0
397,077 + -0.2
397,078 - +0.3
397,078 - +2.6
397,079 + +0.9
397,089 + +2.9
397,124 + -0.8
397,125 - +0.6
397,211 + BACOVA_04066 0.38 +1.4
397,232 - BACOVA_04066 0.54 +0.3
397,273 - BACOVA_04066 0.83 -0.1
397,310 - -0.8
397,365 + +0.5
397,370 + +0.3
397,381 - +0.0

Or see this region's nucleotide sequence