Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03488

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03489 and BACOVA_03488 overlap by 14 nucleotidesBACOVA_03488 and BACOVA_03490 are separated by 139 nucleotides BACOVA_03489: BACOVA_03489 - transcriptional regulator, AraC family, at 242,765 to 245,296 _03489 BACOVA_03488: BACOVA_03488 - hypothetical protein, at 245,283 to 245,423 _03488 BACOVA_03490: BACOVA_03490 - hypothetical protein, at 245,563 to 247,563 _03490 Position (kb) 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 244.322 kb on + strand, within BACOVA_03489at 244.325 kb on - strand, within BACOVA_03489at 244.336 kb on + strand, within BACOVA_03489at 244.357 kb on - strand, within BACOVA_03489at 244.358 kb on + strand, within BACOVA_03489at 244.359 kb on - strand, within BACOVA_03489at 244.470 kb on + strand, within BACOVA_03489at 244.471 kb on - strand, within BACOVA_03489at 244.471 kb on - strand, within BACOVA_03489at 244.526 kb on - strand, within BACOVA_03489at 244.550 kb on - strand, within BACOVA_03489at 244.572 kb on + strand, within BACOVA_03489at 244.572 kb on + strand, within BACOVA_03489at 244.572 kb on + strand, within BACOVA_03489at 244.573 kb on - strand, within BACOVA_03489at 244.573 kb on - strand, within BACOVA_03489at 244.649 kb on + strand, within BACOVA_03489at 244.650 kb on - strand, within BACOVA_03489at 244.656 kb on + strand, within BACOVA_03489at 244.657 kb on - strand, within BACOVA_03489at 244.657 kb on - strand, within BACOVA_03489at 244.731 kb on - strand, within BACOVA_03489at 244.738 kb on - strand, within BACOVA_03489at 244.738 kb on - strand, within BACOVA_03489at 244.757 kb on + strand, within BACOVA_03489at 244.757 kb on + strand, within BACOVA_03489at 244.793 kb on + strand, within BACOVA_03489at 244.794 kb on - strand, within BACOVA_03489at 244.798 kb on - strand, within BACOVA_03489at 244.798 kb on - strand, within BACOVA_03489at 244.842 kb on + strand, within BACOVA_03489at 244.842 kb on + strand, within BACOVA_03489at 244.843 kb on - strand, within BACOVA_03489at 244.860 kb on - strand, within BACOVA_03489at 244.861 kb on + strand, within BACOVA_03489at 244.877 kb on + strand, within BACOVA_03489at 244.878 kb on - strand, within BACOVA_03489at 244.898 kb on + strand, within BACOVA_03489at 244.898 kb on + strand, within BACOVA_03489at 244.898 kb on + strand, within BACOVA_03489at 244.899 kb on - strand, within BACOVA_03489at 244.899 kb on - strand, within BACOVA_03489at 244.899 kb on - strand, within BACOVA_03489at 244.955 kb on + strand, within BACOVA_03489at 244.983 kb on - strand, within BACOVA_03489at 244.995 kb on + strand, within BACOVA_03489at 245.008 kb on - strand, within BACOVA_03489at 245.036 kb on - strand, within BACOVA_03489at 245.048 kb on + strandat 245.090 kb on - strandat 245.092 kb on - strandat 245.092 kb on - strandat 245.108 kb on + strandat 245.109 kb on - strandat 245.109 kb on - strandat 245.112 kb on + strandat 245.112 kb on + strandat 245.113 kb on - strandat 245.183 kb on + strandat 245.184 kb on - strandat 245.215 kb on - strandat 245.215 kb on - strandat 245.280 kb on + strandat 245.280 kb on + strandat 245.281 kb on - strandat 245.282 kb on + strandat 245.282 kb on + strandat 245.283 kb on - strandat 245.313 kb on - strand, within BACOVA_03488at 245.331 kb on - strand, within BACOVA_03488at 245.344 kb on + strand, within BACOVA_03488at 245.421 kb on + strandat 245.422 kb on - strandat 245.431 kb on + strandat 245.432 kb on - strandat 245.436 kb on - strandat 245.493 kb on - strandat 245.493 kb on - strandat 245.547 kb on + strandat 245.547 kb on + strandat 245.548 kb on - strandat 245.548 kb on - strandat 245.553 kb on + strandat 245.553 kb on + strandat 245.553 kb on + strandat 245.553 kb on + strandat 245.554 kb on - strandat 245.554 kb on - strandat 245.559 kb on + strandat 245.559 kb on + strandat 245.560 kb on - strandat 245.609 kb on + strandat 245.610 kb on - strandat 245.642 kb on + strandat 245.681 kb on - strandat 245.683 kb on - strandat 245.683 kb on - strandat 245.746 kb on + strandat 245.748 kb on + strandat 245.750 kb on + strandat 245.750 kb on + strandat 245.751 kb on - strandat 245.754 kb on + strandat 245.754 kb on + strandat 245.755 kb on - strandat 245.755 kb on - strandat 245.759 kb on + strandat 245.760 kb on - strandat 245.859 kb on - strand, within BACOVA_03490at 245.886 kb on + strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.929 kb on + strand, within BACOVA_03490at 245.930 kb on - strand, within BACOVA_03490at 245.930 kb on - strand, within BACOVA_03490at 245.935 kb on + strand, within BACOVA_03490at 245.945 kb on + strand, within BACOVA_03490at 245.946 kb on - strand, within BACOVA_03490at 245.949 kb on + strand, within BACOVA_03490at 245.949 kb on + strand, within BACOVA_03490at 245.950 kb on - strand, within BACOVA_03490at 245.974 kb on + strand, within BACOVA_03490at 245.975 kb on - strand, within BACOVA_03490at 246.079 kb on - strand, within BACOVA_03490at 246.105 kb on + strand, within BACOVA_03490at 246.105 kb on + strand, within BACOVA_03490at 246.105 kb on + strand, within BACOVA_03490at 246.168 kb on + strand, within BACOVA_03490at 246.169 kb on - strand, within BACOVA_03490at 246.214 kb on + strand, within BACOVA_03490at 246.295 kb on + strand, within BACOVA_03490at 246.319 kb on + strand, within BACOVA_03490at 246.320 kb on - strand, within BACOVA_03490at 246.368 kb on - strand, within BACOVA_03490at 246.408 kb on + strand, within BACOVA_03490at 246.408 kb on + strand, within BACOVA_03490at 246.408 kb on + strand, within BACOVA_03490at 246.409 kb on - strand, within BACOVA_03490at 246.413 kb on - strand, within BACOVA_03490

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
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244,322 + BACOVA_03489 0.61 -0.1
244,325 - BACOVA_03489 0.62 -0.7
244,336 + BACOVA_03489 0.62 +0.1
244,357 - BACOVA_03489 0.63 +0.8
244,358 + BACOVA_03489 0.63 -1.2
244,359 - BACOVA_03489 0.63 -0.8
244,470 + BACOVA_03489 0.67 +0.6
244,471 - BACOVA_03489 0.67 -0.4
244,471 - BACOVA_03489 0.67 -0.2
244,526 - BACOVA_03489 0.70 +0.0
244,550 - BACOVA_03489 0.70 -0.6
244,572 + BACOVA_03489 0.71 -1.0
244,572 + BACOVA_03489 0.71 -0.2
244,572 + BACOVA_03489 0.71 -0.3
244,573 - BACOVA_03489 0.71 +0.1
244,573 - BACOVA_03489 0.71 -1.0
244,649 + BACOVA_03489 0.74 +0.3
244,650 - BACOVA_03489 0.74 +0.1
244,656 + BACOVA_03489 0.75 +0.4
244,657 - BACOVA_03489 0.75 +0.1
244,657 - BACOVA_03489 0.75 +2.0
244,731 - BACOVA_03489 0.78 -0.3
244,738 - BACOVA_03489 0.78 -0.0
244,738 - BACOVA_03489 0.78 +0.2
244,757 + BACOVA_03489 0.79 +0.2
244,757 + BACOVA_03489 0.79 -0.0
244,793 + BACOVA_03489 0.80 +0.3
244,794 - BACOVA_03489 0.80 -0.2
244,798 - BACOVA_03489 0.80 +0.7
244,798 - BACOVA_03489 0.80 -0.7
244,842 + BACOVA_03489 0.82 +0.2
244,842 + BACOVA_03489 0.82 -1.0
244,843 - BACOVA_03489 0.82 +0.7
244,860 - BACOVA_03489 0.83 +0.2
244,861 + BACOVA_03489 0.83 +0.6
244,877 + BACOVA_03489 0.83 -0.6
244,878 - BACOVA_03489 0.83 -0.1
244,898 + BACOVA_03489 0.84 -1.4
244,898 + BACOVA_03489 0.84 -1.2
244,898 + BACOVA_03489 0.84 +0.2
244,899 - BACOVA_03489 0.84 +0.5
244,899 - BACOVA_03489 0.84 -0.7
244,899 - BACOVA_03489 0.84 +1.2
244,955 + BACOVA_03489 0.86 -1.3
244,983 - BACOVA_03489 0.88 -0.2
244,995 + BACOVA_03489 0.88 -0.6
245,008 - BACOVA_03489 0.89 +0.1
245,036 - BACOVA_03489 0.90 +0.0
245,048 + +0.5
245,090 - -0.4
245,092 - -0.7
245,092 - -1.2
245,108 + -0.7
245,109 - +0.5
245,109 - -0.3
245,112 + +1.9
245,112 + -0.8
245,113 - -0.2
245,183 + +0.4
245,184 - -0.8
245,215 - -0.3
245,215 - +0.5
245,280 + -1.6
245,280 + +0.7
245,281 - +0.8
245,282 + -0.0
245,282 + -0.3
245,283 - +0.4
245,313 - BACOVA_03488 0.21 -0.9
245,331 - BACOVA_03488 0.34 -1.1
245,344 + BACOVA_03488 0.43 -2.5
245,421 + +0.9
245,422 - -0.2
245,431 + -0.1
245,432 - +0.1
245,436 - +0.2
245,493 - -0.5
245,493 - +0.4
245,547 + +1.5
245,547 + +0.5
245,548 - +0.9
245,548 - +0.3
245,553 + +0.3
245,553 + +0.4
245,553 + +0.5
245,553 + +0.5
245,554 - -0.0
245,554 - -0.8
245,559 + +0.6
245,559 + -0.9
245,560 - -0.6
245,609 + -0.2
245,610 - +0.1
245,642 + -0.3
245,681 - +0.4
245,683 - -0.4
245,683 - +0.3
245,746 + +0.2
245,748 + +1.5
245,750 + +0.4
245,750 + +0.0
245,751 - +0.4
245,754 + -0.4
245,754 + -0.5
245,755 - +1.7
245,755 - -0.0
245,759 + -0.7
245,760 - -1.0
245,859 - BACOVA_03490 0.15 +0.5
245,886 + BACOVA_03490 0.16 -0.9
245,927 - BACOVA_03490 0.18 +0.6
245,927 - BACOVA_03490 0.18 +0.1
245,927 - BACOVA_03490 0.18 +0.0
245,927 - BACOVA_03490 0.18 -0.5
245,929 + BACOVA_03490 0.18 -0.1
245,930 - BACOVA_03490 0.18 -0.0
245,930 - BACOVA_03490 0.18 -0.1
245,935 + BACOVA_03490 0.19 +0.5
245,945 + BACOVA_03490 0.19 -2.2
245,946 - BACOVA_03490 0.19 -1.6
245,949 + BACOVA_03490 0.19 +0.1
245,949 + BACOVA_03490 0.19 +0.4
245,950 - BACOVA_03490 0.19 +0.2
245,974 + BACOVA_03490 0.21 -1.2
245,975 - BACOVA_03490 0.21 +0.9
246,079 - BACOVA_03490 0.26 +0.5
246,105 + BACOVA_03490 0.27 -0.6
246,105 + BACOVA_03490 0.27 +0.0
246,105 + BACOVA_03490 0.27 +0.9
246,168 + BACOVA_03490 0.30 +0.3
246,169 - BACOVA_03490 0.30 +0.4
246,214 + BACOVA_03490 0.33 -0.5
246,295 + BACOVA_03490 0.37 +0.4
246,319 + BACOVA_03490 0.38 -0.6
246,320 - BACOVA_03490 0.38 -0.0
246,368 - BACOVA_03490 0.40 +0.4
246,408 + BACOVA_03490 0.42 +0.8
246,408 + BACOVA_03490 0.42 -1.0
246,408 + BACOVA_03490 0.42 -0.7
246,409 - BACOVA_03490 0.42 +1.3
246,413 - BACOVA_03490 0.42 +0.5

Or see this region's nucleotide sequence