Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03413

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03412 and BACOVA_03413 are separated by 15 nucleotidesBACOVA_03413 and BACOVA_03414 are separated by 38 nucleotides BACOVA_03412: BACOVA_03412 - oxidoreductase, aldo/keto reductase family protein, at 124,080 to 125,012 _03412 BACOVA_03413: BACOVA_03413 - amidohydrolase family protein, at 125,028 to 125,951 _03413 BACOVA_03414: BACOVA_03414 - hypothetical protein, at 125,990 to 127,054 _03414 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.030 kb on + strandat 124.033 kb on + strandat 124.042 kb on - strandat 124.086 kb on + strandat 124.254 kb on + strand, within BACOVA_03412at 124.255 kb on - strand, within BACOVA_03412at 124.256 kb on + strand, within BACOVA_03412at 124.286 kb on + strand, within BACOVA_03412at 124.287 kb on - strand, within BACOVA_03412at 124.319 kb on + strand, within BACOVA_03412at 124.366 kb on - strand, within BACOVA_03412at 124.395 kb on + strand, within BACOVA_03412at 124.396 kb on - strand, within BACOVA_03412at 124.421 kb on - strand, within BACOVA_03412at 124.439 kb on - strand, within BACOVA_03412at 124.492 kb on + strand, within BACOVA_03412at 124.492 kb on + strand, within BACOVA_03412at 124.528 kb on + strand, within BACOVA_03412at 124.529 kb on - strand, within BACOVA_03412at 124.545 kb on - strand, within BACOVA_03412at 124.616 kb on + strand, within BACOVA_03412at 124.651 kb on + strand, within BACOVA_03412at 124.651 kb on + strand, within BACOVA_03412at 124.774 kb on + strand, within BACOVA_03412at 124.787 kb on + strand, within BACOVA_03412at 124.880 kb on - strand, within BACOVA_03412at 124.887 kb on - strand, within BACOVA_03412at 124.887 kb on - strand, within BACOVA_03412at 124.893 kb on - strand, within BACOVA_03412at 124.937 kb on + strandat 124.938 kb on - strandat 124.994 kb on - strandat 124.994 kb on - strandat 124.994 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.042 kb on + strandat 125.043 kb on - strandat 125.043 kb on - strandat 125.079 kb on - strandat 125.079 kb on - strandat 125.166 kb on - strand, within BACOVA_03413at 125.237 kb on + strand, within BACOVA_03413at 125.240 kb on + strand, within BACOVA_03413at 125.252 kb on + strand, within BACOVA_03413at 125.261 kb on + strand, within BACOVA_03413at 125.373 kb on - strand, within BACOVA_03413at 125.448 kb on - strand, within BACOVA_03413at 125.700 kb on + strand, within BACOVA_03413at 125.795 kb on + strand, within BACOVA_03413at 125.796 kb on - strand, within BACOVA_03413at 125.796 kb on - strand, within BACOVA_03413at 125.796 kb on - strand, within BACOVA_03413at 125.809 kb on - strand, within BACOVA_03413at 125.920 kb on + strandat 125.928 kb on + strandat 125.985 kb on - strandat 125.985 kb on - strandat 126.002 kb on - strandat 126.002 kb on - strandat 126.005 kb on + strandat 126.005 kb on + strandat 126.005 kb on + strandat 126.005 kb on + strandat 126.007 kb on + strandat 126.007 kb on + strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.018 kb on + strandat 126.018 kb on + strandat 126.019 kb on - strandat 126.156 kb on - strand, within BACOVA_03414at 126.197 kb on + strand, within BACOVA_03414at 126.197 kb on + strand, within BACOVA_03414at 126.204 kb on - strand, within BACOVA_03414at 126.232 kb on - strand, within BACOVA_03414at 126.235 kb on - strand, within BACOVA_03414at 126.284 kb on + strand, within BACOVA_03414at 126.294 kb on - strand, within BACOVA_03414at 126.294 kb on - strand, within BACOVA_03414at 126.457 kb on + strand, within BACOVA_03414at 126.457 kb on + strand, within BACOVA_03414at 126.504 kb on + strand, within BACOVA_03414at 126.504 kb on + strand, within BACOVA_03414at 126.505 kb on - strand, within BACOVA_03414at 126.530 kb on + strand, within BACOVA_03414at 126.531 kb on - strand, within BACOVA_03414at 126.531 kb on - strand, within BACOVA_03414at 126.532 kb on + strand, within BACOVA_03414at 126.566 kb on + strand, within BACOVA_03414at 126.567 kb on - strand, within BACOVA_03414at 126.582 kb on + strand, within BACOVA_03414at 126.583 kb on - strand, within BACOVA_03414at 126.598 kb on - strand, within BACOVA_03414at 126.598 kb on - strand, within BACOVA_03414at 126.683 kb on - strand, within BACOVA_03414at 126.697 kb on + strand, within BACOVA_03414at 126.729 kb on + strand, within BACOVA_03414at 126.851 kb on - strand, within BACOVA_03414at 126.859 kb on + strand, within BACOVA_03414at 126.860 kb on - strand, within BACOVA_03414at 126.878 kb on - strand, within BACOVA_03414at 126.904 kb on + strand, within BACOVA_03414

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
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124,030 + -0.3
124,033 + -0.3
124,042 - +1.1
124,086 + +0.2
124,254 + BACOVA_03412 0.19 -0.9
124,255 - BACOVA_03412 0.19 -0.5
124,256 + BACOVA_03412 0.19 -2.1
124,286 + BACOVA_03412 0.22 +0.1
124,287 - BACOVA_03412 0.22 -0.0
124,319 + BACOVA_03412 0.26 +1.1
124,366 - BACOVA_03412 0.31 +0.6
124,395 + BACOVA_03412 0.34 +0.2
124,396 - BACOVA_03412 0.34 -0.7
124,421 - BACOVA_03412 0.37 -1.0
124,439 - BACOVA_03412 0.38 -1.2
124,492 + BACOVA_03412 0.44 -0.9
124,492 + BACOVA_03412 0.44 -1.1
124,528 + BACOVA_03412 0.48 +0.0
124,529 - BACOVA_03412 0.48 +0.7
124,545 - BACOVA_03412 0.50 +0.3
124,616 + BACOVA_03412 0.57 -0.2
124,651 + BACOVA_03412 0.61 +0.2
124,651 + BACOVA_03412 0.61 +0.0
124,774 + BACOVA_03412 0.74 +0.0
124,787 + BACOVA_03412 0.76 -0.0
124,880 - BACOVA_03412 0.86 +0.6
124,887 - BACOVA_03412 0.86 -1.5
124,887 - BACOVA_03412 0.86 -0.2
124,893 - BACOVA_03412 0.87 -1.2
124,937 + -0.1
124,938 - -0.3
124,994 - -0.3
124,994 - -1.4
124,994 - +0.4
125,037 - +0.4
125,037 - +0.1
125,037 - -0.0
125,037 - -2.0
125,037 - -0.4
125,042 + +0.2
125,043 - -0.6
125,043 - -0.6
125,079 - -0.8
125,079 - -0.2
125,166 - BACOVA_03413 0.15 -0.1
125,237 + BACOVA_03413 0.23 +0.2
125,240 + BACOVA_03413 0.23 +0.8
125,252 + BACOVA_03413 0.24 -0.7
125,261 + BACOVA_03413 0.25 -0.2
125,373 - BACOVA_03413 0.37 -1.4
125,448 - BACOVA_03413 0.45 +0.1
125,700 + BACOVA_03413 0.73 +0.1
125,795 + BACOVA_03413 0.83 -0.6
125,796 - BACOVA_03413 0.83 -1.0
125,796 - BACOVA_03413 0.83 +0.1
125,796 - BACOVA_03413 0.83 +0.0
125,809 - BACOVA_03413 0.85 -2.8
125,920 + -0.5
125,928 + +0.5
125,985 - -0.3
125,985 - -0.6
126,002 - +0.2
126,002 - -1.2
126,005 + -0.9
126,005 + -0.2
126,005 + -1.2
126,005 + -0.4
126,007 + +0.5
126,007 + +0.9
126,008 - +1.1
126,008 - +0.4
126,008 - -0.3
126,008 - -1.6
126,008 - -1.0
126,018 + -1.0
126,018 + -0.4
126,019 - +0.2
126,156 - BACOVA_03414 0.16 -0.9
126,197 + BACOVA_03414 0.19 -0.3
126,197 + BACOVA_03414 0.19 -1.4
126,204 - BACOVA_03414 0.20 -0.7
126,232 - BACOVA_03414 0.23 -1.3
126,235 - BACOVA_03414 0.23 -0.4
126,284 + BACOVA_03414 0.28 -0.7
126,294 - BACOVA_03414 0.29 +0.3
126,294 - BACOVA_03414 0.29 -0.1
126,457 + BACOVA_03414 0.44 +0.2
126,457 + BACOVA_03414 0.44 -0.6
126,504 + BACOVA_03414 0.48 -0.6
126,504 + BACOVA_03414 0.48 -1.2
126,505 - BACOVA_03414 0.48 -1.1
126,530 + BACOVA_03414 0.51 -1.6
126,531 - BACOVA_03414 0.51 -0.3
126,531 - BACOVA_03414 0.51 +0.0
126,532 + BACOVA_03414 0.51 -0.2
126,566 + BACOVA_03414 0.54 -0.7
126,567 - BACOVA_03414 0.54 +0.2
126,582 + BACOVA_03414 0.56 -0.3
126,583 - BACOVA_03414 0.56 -1.1
126,598 - BACOVA_03414 0.57 -1.2
126,598 - BACOVA_03414 0.57 -0.6
126,683 - BACOVA_03414 0.65 -1.9
126,697 + BACOVA_03414 0.66 +0.3
126,729 + BACOVA_03414 0.69 +0.7
126,851 - BACOVA_03414 0.81 +0.5
126,859 + BACOVA_03414 0.82 -1.1
126,860 - BACOVA_03414 0.82 +0.1
126,878 - BACOVA_03414 0.83 -1.8
126,904 + BACOVA_03414 0.86 +0.1

Or see this region's nucleotide sequence