Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7 and GFF8 overlap by 4 nucleotides GFF8 and GFF9 overlap by 1 nucleotides GFF9 and GFF10 are separated by 9 nucleotides
GFF7 - hypothetical protein, at 4,767 to 5,771
GFF7
GFF8 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 5,768 to 6,532
GFF8
GFF9 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 6,532 to 7,299
GFF9
GFF10 - N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47), at 7,309 to 8,517
GFF10
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1 at 5.885 kb on + strand, within GFF8 at 6.015 kb on - strand, within GFF8 at 6.592 kb on + strand at 6.592 kb on + strand at 6.592 kb on + strand at 6.593 kb on - strand at 6.593 kb on - strand at 6.658 kb on + strand, within GFF9 at 6.658 kb on + strand, within GFF9 at 6.659 kb on - strand, within GFF9 at 6.659 kb on - strand, within GFF9 at 6.685 kb on + strand, within GFF9 at 6.686 kb on - strand, within GFF9 at 6.709 kb on + strand, within GFF9 at 6.710 kb on - strand, within GFF9 at 6.710 kb on - strand, within GFF9 at 6.940 kb on + strand, within GFF9 at 6.940 kb on + strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 7.486 kb on + strand, within GFF10 at 7.487 kb on - strand, within GFF10 at 7.615 kb on + strand, within GFF10 at 7.828 kb on + strand, within GFF10 at 8.201 kb on - strand, within GFF10 at 8.224 kb on + strand, within GFF10 at 8.225 kb on - strand, within GFF10
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 5,885 + GFF8 0.15 +0.4 6,015 - GFF8 0.32 -0.1 6,592 + -0.5 6,592 + -0.9 6,592 + +0.5 6,593 - -0.2 6,593 - +0.2 6,658 + GFF9 0.16 +0.1 6,658 + GFF9 0.16 -1.3 6,659 - GFF9 0.17 -0.4 6,659 - GFF9 0.17 -0.4 6,685 + GFF9 0.20 -0.2 6,686 - GFF9 0.20 -0.3 6,709 + GFF9 0.23 +0.4 6,710 - GFF9 0.23 +0.5 6,710 - GFF9 0.23 -1.3 6,940 + GFF9 0.53 +0.0 6,940 + GFF9 0.53 +0.2 6,941 - GFF9 0.53 -0.1 6,941 - GFF9 0.53 +0.5 6,941 - GFF9 0.53 -0.7 6,941 - GFF9 0.53 -2.2 7,486 + GFF10 0.15 +0.0 7,487 - GFF10 0.15 -0.0 7,615 + GFF10 0.25 -0.1 7,828 + GFF10 0.43 -1.4 8,201 - GFF10 0.74 +0.8 8,224 + GFF10 0.76 -0.2 8,225 - GFF10 0.76 +0.3
Or see this region's nucleotide sequence