Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF888 and GFF889 overlap by 4 nucleotides GFF889 and GFF890 are separated by 36 nucleotides GFF890 and GFF891 are separated by 187 nucleotides
GFF888 - MmgE/PrpD family protein, at 615,500 to 616,900
GFF888
GFF889 - Citrate lyase beta chain (EC 4.1.3.6), at 616,897 to 617,742
GFF889
GFF890 - Citrate synthase (si) (EC 2.3.3.1), at 617,779 to 618,567
GFF890
GFF891 - Biotin synthase (EC 2.8.1.6), at 618,755 to 619,678
GFF891
Position (kb) 617
618
619 Strain fitness (log2 ratio) -1
0
1 at 617.239 kb on + strand, within GFF889 at 617.239 kb on + strand, within GFF889 at 617.239 kb on + strand, within GFF889 at 617.239 kb on + strand, within GFF889 at 617.241 kb on + strand, within GFF889 at 617.241 kb on + strand, within GFF889 at 617.242 kb on - strand, within GFF889 at 617.823 kb on + strand at 617.896 kb on - strand, within GFF890 at 618.019 kb on + strand, within GFF890 at 618.019 kb on + strand, within GFF890 at 618.020 kb on - strand, within GFF890 at 618.121 kb on + strand, within GFF890 at 618.121 kb on + strand, within GFF890 at 618.122 kb on - strand, within GFF890 at 618.191 kb on - strand, within GFF890 at 618.191 kb on - strand, within GFF890 at 618.305 kb on - strand, within GFF890 at 618.305 kb on - strand, within GFF890 at 618.305 kb on - strand, within GFF890 at 618.612 kb on + strand at 618.644 kb on + strand at 618.645 kb on - strand at 618.645 kb on - strand at 618.893 kb on + strand, within GFF891 at 618.914 kb on - strand, within GFF891 at 619.166 kb on + strand, within GFF891 at 619.167 kb on - strand, within GFF891 at 619.167 kb on - strand, within GFF891 at 619.227 kb on - strand, within GFF891
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 617,239 + GFF889 0.40 +0.5 617,239 + GFF889 0.40 +0.0 617,239 + GFF889 0.40 -0.0 617,239 + GFF889 0.40 -0.7 617,241 + GFF889 0.41 -0.2 617,241 + GFF889 0.41 +0.3 617,242 - GFF889 0.41 +0.4 617,823 + +0.3 617,896 - GFF890 0.15 +0.4 618,019 + GFF890 0.30 -1.0 618,019 + GFF890 0.30 +0.2 618,020 - GFF890 0.31 -0.8 618,121 + GFF890 0.43 -0.7 618,121 + GFF890 0.43 -0.4 618,122 - GFF890 0.43 -0.2 618,191 - GFF890 0.52 -0.5 618,191 - GFF890 0.52 -0.9 618,305 - GFF890 0.67 -1.2 618,305 - GFF890 0.67 +0.0 618,305 - GFF890 0.67 +0.4 618,612 + -0.3 618,644 + -0.4 618,645 - -0.5 618,645 - -1.6 618,893 + GFF891 0.15 -1.2 618,914 - GFF891 0.17 +0.3 619,166 + GFF891 0.44 +0.1 619,167 - GFF891 0.45 -1.0 619,167 - GFF891 0.45 +0.5 619,227 - GFF891 0.51 -0.3
Or see this region's nucleotide sequence