Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF794 and GFF795 are separated by 19 nucleotides GFF795 and GFF796 are separated by 34 nucleotides GFF796 and GFF797 are separated by 72 nucleotides
GFF794 - Glucarate dehydratase (EC 4.2.1.40), at 489,361 to 490,650
GFF794
GFF795 - TRAP-type C4-dicarboxylate transport system, large permease component, at 490,670 to 491,962
GFF795
GFF796 - TRAP-type C4-dicarboxylate transport system, small permease component, at 491,997 to 492,539
GFF796
GFF797 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 492,612 to 493,580
GFF797
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 489.899 kb on + strand, within GFF794 at 489.900 kb on - strand, within GFF794 at 489.902 kb on + strand, within GFF794 at 489.903 kb on - strand, within GFF794 at 490.184 kb on + strand, within GFF794 at 490.193 kb on + strand, within GFF794 at 490.496 kb on + strand, within GFF794 at 490.671 kb on + strand at 490.671 kb on + strand at 490.672 kb on - strand at 491.068 kb on - strand, within GFF795 at 491.184 kb on + strand, within GFF795 at 491.185 kb on - strand, within GFF795 at 491.383 kb on - strand, within GFF795 at 491.386 kb on - strand, within GFF795 at 491.562 kb on + strand, within GFF795 at 491.563 kb on - strand, within GFF795 at 491.969 kb on + strand at 491.970 kb on - strand at 491.978 kb on + strand at 492.322 kb on + strand, within GFF796 at 492.323 kb on - strand, within GFF796 at 492.323 kb on - strand, within GFF796 at 492.380 kb on - strand, within GFF796 at 492.614 kb on - strand at 492.676 kb on + strand at 492.910 kb on + strand, within GFF797 at 492.917 kb on - strand, within GFF797 at 492.953 kb on - strand, within GFF797
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 489,899 + GFF794 0.42 -2.5 489,900 - GFF794 0.42 -2.3 489,902 + GFF794 0.42 -2.7 489,903 - GFF794 0.42 +0.5 490,184 + GFF794 0.64 -0.4 490,193 + GFF794 0.64 -0.5 490,496 + GFF794 0.88 -0.7 490,671 + -1.5 490,671 + +0.1 490,672 - -0.0 491,068 - GFF795 0.31 +1.2 491,184 + GFF795 0.40 -1.3 491,185 - GFF795 0.40 +0.0 491,383 - GFF795 0.55 -0.5 491,386 - GFF795 0.55 -1.8 491,562 + GFF795 0.69 -0.2 491,563 - GFF795 0.69 +1.9 491,969 + +0.3 491,970 - -0.8 491,978 + +1.0 492,322 + GFF796 0.60 +1.1 492,323 - GFF796 0.60 -1.2 492,323 - GFF796 0.60 -0.2 492,380 - GFF796 0.71 +1.5 492,614 - -1.0 492,676 + -0.8 492,910 + GFF797 0.31 -1.1 492,917 - GFF797 0.31 -0.1 492,953 - GFF797 0.35 -0.0
Or see this region's nucleotide sequence