Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF668 and GFF669 are separated by 130 nucleotides GFF669 and GFF670 are separated by 3 nucleotides
GFF668 - Transcriptional regulator, LysR family, at 350,147 to 351,118
GFF668
GFF669 - FMN-dependent NADH-azoreductase, at 351,249 to 351,893
GFF669
GFF670 - putative exported protein, at 351,897 to 356,024
GFF670
Position (kb) 351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 350.385 kb on + strand, within GFF668 at 350.385 kb on + strand, within GFF668 at 350.385 kb on + strand, within GFF668 at 350.386 kb on - strand, within GFF668 at 350.386 kb on - strand, within GFF668 at 350.386 kb on - strand, within GFF668 at 350.458 kb on - strand, within GFF668 at 350.458 kb on - strand, within GFF668 at 350.778 kb on + strand, within GFF668 at 350.778 kb on + strand, within GFF668 at 350.778 kb on + strand, within GFF668 at 350.779 kb on - strand, within GFF668 at 350.779 kb on - strand, within GFF668 at 350.925 kb on + strand, within GFF668 at 350.925 kb on + strand, within GFF668 at 350.926 kb on - strand, within GFF668 at 351.154 kb on + strand at 351.154 kb on + strand at 351.175 kb on + strand at 351.175 kb on - strand at 351.176 kb on - strand at 351.204 kb on + strand at 351.204 kb on + strand at 351.205 kb on - strand at 351.205 kb on - strand at 351.205 kb on - strand at 351.205 kb on - strand at 351.246 kb on + strand at 351.531 kb on + strand, within GFF669 at 351.531 kb on + strand, within GFF669 at 351.531 kb on + strand, within GFF669 at 351.531 kb on + strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.603 kb on + strand, within GFF669 at 351.603 kb on + strand, within GFF669 at 351.603 kb on + strand, within GFF669 at 351.604 kb on - strand, within GFF669 at 351.604 kb on - strand, within GFF669 at 351.675 kb on + strand, within GFF669 at 351.675 kb on + strand, within GFF669 at 351.675 kb on + strand, within GFF669 at 351.676 kb on - strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.721 kb on - strand, within GFF669 at 351.721 kb on - strand, within GFF669 at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.983 kb on - strand at 351.983 kb on - strand at 352.028 kb on - strand at 352.036 kb on + strand at 352.036 kb on + strand at 352.036 kb on + strand at 352.037 kb on - strand at 352.037 kb on - strand at 352.400 kb on - strand, within GFF670 at 352.460 kb on - strand, within GFF670 at 352.546 kb on + strand, within GFF670 at 352.546 kb on + strand, within GFF670 at 352.546 kb on + strand, within GFF670 at 352.855 kb on + strand, within GFF670 at 352.855 kb on + strand, within GFF670 at 352.856 kb on - strand, within GFF670 at 352.856 kb on - strand, within GFF670
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 350,385 + GFF668 0.24 +0.3 350,385 + GFF668 0.24 +1.8 350,385 + GFF668 0.24 +0.2 350,386 - GFF668 0.25 -0.2 350,386 - GFF668 0.25 -0.6 350,386 - GFF668 0.25 -0.1 350,458 - GFF668 0.32 +1.0 350,458 - GFF668 0.32 -0.8 350,778 + GFF668 0.65 -0.5 350,778 + GFF668 0.65 -0.1 350,778 + GFF668 0.65 +0.5 350,779 - GFF668 0.65 -2.3 350,779 - GFF668 0.65 +0.5 350,925 + GFF668 0.80 +0.3 350,925 + GFF668 0.80 +0.1 350,926 - GFF668 0.80 -0.8 351,154 + +0.3 351,154 + +0.1 351,175 + +0.3 351,175 - +2.2 351,176 - -2.4 351,204 + +0.0 351,204 + +0.1 351,205 - +0.2 351,205 - -0.7 351,205 - +1.6 351,205 - -1.0 351,246 + +0.2 351,531 + GFF669 0.44 +1.0 351,531 + GFF669 0.44 -0.5 351,531 + GFF669 0.44 +0.1 351,531 + GFF669 0.44 +0.5 351,532 - GFF669 0.44 -0.6 351,532 - GFF669 0.44 +1.3 351,532 - GFF669 0.44 -0.9 351,532 - GFF669 0.44 +0.0 351,603 + GFF669 0.55 +0.1 351,603 + GFF669 0.55 -0.1 351,603 + GFF669 0.55 -0.9 351,604 - GFF669 0.55 +0.0 351,604 - GFF669 0.55 -0.6 351,675 + GFF669 0.66 -1.2 351,675 + GFF669 0.66 -0.6 351,675 + GFF669 0.66 +0.4 351,676 - GFF669 0.66 -1.9 351,720 + GFF669 0.73 -0.1 351,720 + GFF669 0.73 +0.3 351,720 + GFF669 0.73 -0.2 351,720 + GFF669 0.73 -0.2 351,721 - GFF669 0.73 +0.3 351,721 - GFF669 0.73 -0.8 351,982 + +0.5 351,982 + -1.0 351,982 + +0.2 351,982 + +0.1 351,982 + -0.4 351,982 + -0.1 351,983 - +0.3 351,983 - -0.5 352,028 - -0.3 352,036 + +0.9 352,036 + -0.3 352,036 + +0.0 352,037 - +0.9 352,037 - -0.7 352,400 - GFF670 0.12 -0.9 352,460 - GFF670 0.14 -1.1 352,546 + GFF670 0.16 +0.1 352,546 + GFF670 0.16 +1.1 352,546 + GFF670 0.16 +0.3 352,855 + GFF670 0.23 -0.5 352,855 + GFF670 0.23 +1.0 352,856 - GFF670 0.23 -1.1 352,856 - GFF670 0.23 -0.4
Or see this region's nucleotide sequence