Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF646 and GFF647 are separated by 3 nucleotides GFF647 and GFF648 are separated by 65 nucleotides GFF648 and GFF649 overlap by 4 nucleotides
GFF646 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 322,748 to 328,672
GFF646
GFF647 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 328,676 to 330,175
GFF647
GFF648 - UPF0301 protein YqgE, at 330,241 to 330,828
GFF648
GFF649 - Putative Holliday junction resolvase YggF, at 330,825 to 331,253
GFF649
Position (kb) 328
329
330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 327.939 kb on - strand, within GFF646 at 327.939 kb on - strand, within GFF646 at 328.163 kb on + strand at 328.164 kb on - strand at 328.164 kb on - strand at 328.595 kb on + strand at 328.595 kb on + strand at 328.596 kb on - strand at 328.647 kb on - strand at 328.647 kb on - strand at 328.713 kb on + strand at 329.229 kb on + strand, within GFF647 at 329.229 kb on + strand, within GFF647 at 329.230 kb on - strand, within GFF647 at 329.230 kb on - strand, within GFF647 at 329.287 kb on - strand, within GFF647 at 329.415 kb on + strand, within GFF647 at 329.416 kb on - strand, within GFF647 at 329.458 kb on - strand, within GFF647 at 329.458 kb on - strand, within GFF647 at 329.527 kb on + strand, within GFF647 at 329.620 kb on - strand, within GFF647 at 329.683 kb on - strand, within GFF647 at 329.683 kb on - strand, within GFF647 at 330.165 kb on + strand at 330.165 kb on + strand at 330.165 kb on + strand at 330.166 kb on - strand at 330.166 kb on - strand at 330.166 kb on - strand at 330.166 kb on - strand at 330.220 kb on + strand at 330.541 kb on + strand, within GFF648 at 330.541 kb on + strand, within GFF648 at 330.541 kb on + strand, within GFF648 at 330.541 kb on + strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.652 kb on + strand, within GFF648 at 330.653 kb on - strand, within GFF648 at 330.653 kb on - strand, within GFF648
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 327,939 - GFF646 0.88 +0.2 327,939 - GFF646 0.88 +2.0 328,163 + +0.5 328,164 - +0.4 328,164 - +0.4 328,595 + -0.6 328,595 + +1.9 328,596 - -0.0 328,647 - -0.0 328,647 - -1.8 328,713 + -0.1 329,229 + GFF647 0.37 +0.2 329,229 + GFF647 0.37 +0.4 329,230 - GFF647 0.37 -1.1 329,230 - GFF647 0.37 +0.9 329,287 - GFF647 0.41 +0.1 329,415 + GFF647 0.49 -0.0 329,416 - GFF647 0.49 -1.0 329,458 - GFF647 0.52 -2.5 329,458 - GFF647 0.52 +0.1 329,527 + GFF647 0.57 +0.5 329,620 - GFF647 0.63 +0.5 329,683 - GFF647 0.67 -0.4 329,683 - GFF647 0.67 +1.5 330,165 + -0.2 330,165 + -1.6 330,165 + -0.5 330,166 - -0.2 330,166 - -0.9 330,166 - -0.3 330,166 - -1.9 330,220 + -0.4 330,541 + GFF648 0.51 -0.7 330,541 + GFF648 0.51 -0.1 330,541 + GFF648 0.51 +0.0 330,541 + GFF648 0.51 -1.5 330,542 - GFF648 0.51 -0.8 330,542 - GFF648 0.51 +0.4 330,542 - GFF648 0.51 -2.2 330,542 - GFF648 0.51 -0.2 330,542 - GFF648 0.51 -0.8 330,652 + GFF648 0.70 -0.8 330,653 - GFF648 0.70 -0.0 330,653 - GFF648 0.70 -0.3
Or see this region's nucleotide sequence